Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG95588 | Soybean | nucleus | 67.04 | 65.41 |
| PGSC0003DMT400049793 | Potato | nucleus | 64.82 | 64.29 |
| PGSC0003DMT400049795 | Potato | nucleus | 63.43 | 63.61 |
| Solyc09g065660.2.1 | Tomato | nucleus | 64.82 | 62.9 |
| KRH67266 | Soybean | nucleus | 66.48 | 62.18 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 46.81 | 58.28 |
| CDX95313 | Canola | nucleus | 43.21 | 58.21 |
| KRH32059 | Soybean | nucleus | 54.57 | 57.77 |
| Bra012829.1-P | Field mustard | nucleus | 39.61 | 57.66 |
| AT3G51910.1 | Thale cress | nucleus | 43.21 | 57.35 |
| CDX90626 | Canola | nucleus | 42.66 | 57.25 |
| Bra012828.1-P | Field mustard | nucleus | 42.38 | 56.88 |
| CDY29054 | Canola | nucleus | 41.27 | 56.23 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 45.71 | 53.57 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 52.08 | 53.41 |
| CDX90627 | Canola | nucleus | 41.83 | 52.61 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 48.2 | 52.1 |
| Os10t0419300-00 | Rice | nucleus | 50.42 | 50.84 |
| EER94213 | Sorghum | nucleus | 50.97 | 50.83 |
| Zm00001d032923_P002 | Maize | nucleus | 50.14 | 50.7 |
| CDY11470 | Canola | nucleus | 39.89 | 50.53 |
| Bra007739.1-P | Field mustard | nucleus | 39.89 | 50.53 |
| AT3G63350.1 | Thale cress | nucleus | 39.06 | 50.0 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 45.71 | 49.55 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 50.69 | 49.19 |
| Os07t0178600-01 | Rice | nucleus | 50.69 | 49.19 |
| CDX76693 | Canola | nucleus | 38.78 | 49.12 |
| TraesCS4D01G276500.1 | Wheat | nucleus | 46.26 | 48.97 |
| EER93298 | Sorghum | nucleus | 45.98 | 48.97 |
| EER95940 | Sorghum | nucleus | 50.42 | 48.92 |
| TraesCS5D01G445100.1 | Wheat | nucleus | 47.09 | 48.85 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 46.81 | 48.84 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 45.98 | 48.68 |
| TraesCS5B01G440700.1 | Wheat | nucleus | 47.37 | 48.44 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 45.71 | 48.39 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 45.71 | 47.97 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 48.75 | 47.83 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 47.37 | 47.77 |
| Zm00001d018941_P001 | Maize | nucleus | 49.03 | 47.2 |
| TraesCS1D01G382900.1 | Wheat | nucleus | 47.37 | 46.98 |
| Os03t0161900-02 | Rice | nucleus | 49.31 | 46.97 |
| EER95463 | Sorghum | nucleus | 50.14 | 46.29 |
| Zm00001d027757_P001 | Maize | nucleus | 48.48 | 45.57 |
| EER90889 | Sorghum | nucleus | 44.32 | 43.13 |
| Zm00001d033987_P001 | Maize | nucleus | 43.77 | 42.59 |
| TraesCS2D01G087400.1 | Wheat | nucleus | 48.48 | 42.48 |
| TraesCS2B01G105100.1 | Wheat | nucleus | 47.65 | 42.47 |
| HORVU2Hr1G014590.1 | Barley | nucleus | 49.03 | 42.34 |
| HORVU5Hr1G094380.1 | Barley | nucleus | 43.49 | 42.32 |
| TraesCS5D01G393200.1 | Wheat | nucleus | 44.04 | 42.18 |
| TraesCS2A01G089300.1 | Wheat | nucleus | 48.2 | 42.13 |
| TraesCS5A01G383800.1 | Wheat | nucleus | 42.66 | 41.4 |
| TraesCS3A01G405200.1 | Wheat | nucleus | 43.77 | 39.8 |
| VIT_04s0008g01110.t01 | Wine grape | nucleus | 42.66 | 39.69 |
| TraesCS3B01G438900.1 | Wheat | nucleus | 42.94 | 35.8 |
| VIT_12s0028g01410.t01 | Wine grape | nucleus | 34.07 | 33.33 |
| HORVU5Hr1G105770.2 | Barley | nucleus | 47.92 | 33.21 |
| VIT_10s0003g01770.t01 | Wine grape | nucleus | 31.3 | 32.56 |
| VIT_02s0012g01810.t01 | Wine grape | nucleus | 44.04 | 32.06 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 28.53 | 31.31 |
| VIT_16s0039g01840.t01 | Wine grape | nucleus, plastid | 41.83 | 29.49 |
| Zm00001d034433_P003 | Maize | nucleus | 47.65 | 27.7 |
| VIT_08s0007g03900.t01 | Wine grape | nucleus | 36.01 | 24.48 |
| VIT_05s0029g00350.t01 | Wine grape | mitochondrion, nucleus | 22.71 | 18.64 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:100258060 | wikigene:100258060 | MapMan:15.5.13 | ProteinID:CCB49577 | ProteinID:CCB49577.1 |
| ncoils:Coil | UniProt:F6HBI2 | EMBL:FN595511 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | EntrezGene:LOC100258060 | wikigene:LOC100258060 |
| PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF260 | SMART:SM00415 |
| SUPFAM:SSF46785 | TIGR:TC56435 | UniParc:UPI00015CA7AA | ArrayExpress:VIT_00s0179g00150 | EnsemblPlantsGene:VIT_00s0179g00150 | EnsemblPlants:VIT_00s0179g00150.t01 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | RefSeq:XP_002280618 | RefSeq:XP_002280618.1 | RefSeq:XP_019073572.1 | SEG:seg |
Description
No Description!
Coordinates
chrUn:+:7416097..7419674
Molecular Weight (calculated)
40917.1 Da
IEP (calculated)
5.223
GRAVY (calculated)
-0.798
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPMYPVKEE FPGSSSSPQS GEPPVVPQPV EGLHDAGPPP FLTKTFDIVD DPASDHVVSW SRAGSSFVVW DPHAFSTNLL PKNFKHNNFS SFVRQLNTYG
101: FRKIDPDRWE FANEGFIRGQ RHLLKNIRRR KTPSQAPPPH QALDPCVEVG RFGLDGEVDR LQRDKHVLMM ELVKLRQQQQ NTRITLQAME QRLQGTEIKQ
201: QQMMNFLARA MQNPAFIQQL VQQKERRKEI VEAISKKRRR PIDQGTSGAG GTESSHGNGL RNPIKIEPLH FTEGNGFEVS ELEALAFEMQ GLGRPRKELE
301: DHEELDPPES EDKELDEGFW EELLNERFGC PSSLPGAEGE EEEEDVNVLA GRFGYLGSSP Q
101: FRKIDPDRWE FANEGFIRGQ RHLLKNIRRR KTPSQAPPPH QALDPCVEVG RFGLDGEVDR LQRDKHVLMM ELVKLRQQQQ NTRITLQAME QRLQGTEIKQ
201: QQMMNFLARA MQNPAFIQQL VQQKERRKEI VEAISKKRRR PIDQGTSGAG GTESSHGNGL RNPIKIEPLH FTEGNGFEVS ELEALAFEMQ GLGRPRKELE
301: DHEELDPPES EDKELDEGFW EELLNERFGC PSSLPGAEGE EEEEDVNVLA GRFGYLGSSP Q
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.