Factsheet for VIT_04s0008g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00280.t01
VIT_04s0008g01110.t01
VIT_16s0050g01150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26150.1	VIT_04s0008g01110.t01	AT2G26150.1	21510947
AT2G26150.1	VIT_02s0025g00280.t01	AT5G52640.1	19366428
AT2G26150.1	VIT_16s0050g01150.t01	AT5G52640.1	19366428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05436	Soybean	nucleus	57.22	62.54
KRH15573	Soybean	nucleus	58.51	62.36
PGSC0003DMT400021234	Potato	nucleus	53.61	58.92
KRH61515	Soybean	nucleus	56.44	58.87
CDY21503	Canola	nucleus	52.32	58.17
Bra000557.1-P	Field mustard	nucleus	51.55	57.47
AT2G26150.1	Thale cress	nucleus	50.77	57.1
GSMUA_Achr2P16660_001	Banana	nucleus	39.95	56.78
GSMUA_Achr6P00960_001	Banana	nucleus	45.36	56.23
CDX83217	Canola	nucleus	51.55	53.62
VIT_00s0179g00150.t01	Wine grape	nucleus	39.69	42.66
Os06t0565200-00	Rice	nucleus	35.57	41.69
VIT_05s0020g04090.t01	Wine grape	nucleus	37.63	41.48
TraesCS7B01G267300.1	Wheat	nucleus	37.11	40.79
TraesCS7A01G360400.1	Wheat	nucleus	35.82	38.83
Zm00001d046204_P001	Maize	nucleus	35.82	38.08
HORVU7Hr1G087690.1	Barley	nucleus	35.57	37.81
VIT_10s0003g01770.t01	Wine grape	nucleus	28.87	32.28
EES00942	Sorghum	plastid	32.47	31.98
KXG20211	Sorghum	nucleus	34.28	31.89
Os01t0571300-01	Rice	mitochondrion, nucleus	32.99	31.84
VIT_11s0016g03940.t01	Wine grape	nucleus	25.77	30.4
VIT_12s0028g01410.t01	Wine grape	nucleus	28.87	30.35
VIT_02s0012g01810.t01	Wine grape	nucleus	37.37	29.23
Zm00001d044259_P001	Maize	plastid	27.84	28.65
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	36.6	27.73
VIT_08s0007g03900.t01	Wine grape	nucleus	29.12	21.28
VIT_05s0029g00350.t01	Wine grape	mitochondrion, nucleus	18.04	15.91

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100245740	wikigene:100245740	MapMan:15.5.13	ProteinID:AFI98399	ProteinID:AFI98399.1
EMBL:AM474585	ProteinID:CAN83677	ProteinID:CAN83677.1	ProteinID:CCB46560	ProteinID:CCB46560.1	ncoils:Coil
UniProt:F6H3M7	EMBL:FN595231	GO:GO:0001666	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009408	GO:GO:0009628	GO:GO:0009644	GO:GO:0009719	GO:GO:0009987	GO:GO:0010200
GO:GO:0010286	GO:GO:0034605	GO:GO:0034620	GO:GO:0042542	GO:GO:0043565	GO:GO:0044212
GO:GO:0045893	GO:GO:0071456	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	EMBL:JQ801738
EntrezGene:LOC100245740	wikigene:LOC100245740	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015
PANTHER:PTHR10015:SF186	SMART:SM00415	SUPFAM:SSF46785	TIGR:TC58077	TIGR:TC69670	TIGR:TC69854
UniParc:UPI0001982E33	ArrayExpress:VIT_04s0008g01110	EnsemblPlantsGene:VIT_04s0008g01110	EnsemblPlants:VIT_04s0008g01110.t01	unigene:Vvi.9732	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_002278709	RefSeq:XP_002278709.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:921552..923881

Molecular Weight (calculated)

44161.6 Da

IEP (calculated)

4.612

GRAVY (calculated)

-0.687

Length

388 amino acids

Sequence
(BLAST)

001: MDGVMVKEEE PVVSWTMGSS SSSSSSPGFA PHPLEGLHEV GPPPFLTKTF DMVEDPATDS VVSWSRARNS FIVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKVDP DRWEFANEGF LGGQKHLLKN IKRRRHVSQN TQQGGLGACV ELGQYGLEDE LERLKRDRNV LMAEIGKLRQ QQQNSRNELV AMEGRMQNTE
201: KKQMQMMTFL AKALNNPSFV QQFIQQRREL RGAEIGRKRR LTTSQSAENL QEVITVASID QAFSYTNQDD GDMSGIESEI ETFFSGGWDN ESSEDIKDPK
301: ADSIDNNLGS VNDVIWEELL SDDLIAGNEE EVPPLRLGDH HEPETDVEVE DLVATPSDWG EDFQDLVDQM AFLRPNLRSR LERRVLNL

Best Arabidopsis Sequence Match ( AT2G26150.4 )
(BLAST)

001: MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP

Arabidopsis Description

HSFA2Heat stress transcription factor A-2 [Source:UniProtKB/Swiss-Prot;Acc:O80982]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.