Factsheet for TraesCS7B01G267300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G033700.1
TraesCS2B01G047400.1
TraesCS2D01G033200.2
TraesCS7A01G360400.1
TraesCS7B01G267300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26150.1	TraesCS7A01G360400.1	AT2G26150.1	21510947
AT2G26150.1	TraesCS7B01G267300.1	AT2G26150.1	21510947
AT2G26150.1	TraesCS2A01G033700.1	AT5G52640.1	19366428
AT2G26150.1	TraesCS2B01G047400.1	AT5G52640.1	19366428
AT2G26150.1	TraesCS2D01G033200.2	AT5G52640.1	19366428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G087690.1	Barley	nucleus	88.95	86.03
TraesCS7A01G360400.1	Wheat	nucleus	86.4	85.2
Os06t0565200-00	Rice	nucleus	60.62	64.65
Zm00001d046204_P001	Maize	nucleus	56.94	55.07
KXG20211	Sorghum	nucleus	56.94	48.2
GSMUA_Achr2P16660_001	Banana	nucleus	35.13	45.42
GSMUA_Achr6P00960_001	Banana	nucleus	39.38	44.41
TraesCS4B01G383200.1	Wheat	nucleus	25.78	39.39
KRH05436	Soybean	nucleus	38.53	38.31
TraesCS3B01G568200.1	Wheat	nucleus	24.65	37.99
TraesCS4B01G383300.1	Wheat	nucleus	29.18	37.45
TraesCS3B01G314600.1	Wheat	nucleus	24.08	37.44
VIT_04s0008g01110.t01	Wine grape	nucleus	40.79	37.11
KRH15573	Soybean	nucleus	38.24	37.09
TraesCS4B01G385800.1	Wheat	nucleus	28.61	37.0
TraesCS4B01G383400.1	Wheat	nucleus	27.76	36.57
CDY21503	Canola	nucleus	35.98	36.39
Bra000557.1-P	Field mustard	nucleus	35.69	36.21
TraesCS3B01G568300.1	Wheat	nucleus	28.05	36.13
AT2G26150.1	Thale cress	nucleus	35.13	35.94
TraesCS4B01G278100.1	Wheat	nucleus	34.56	35.78
PGSC0003DMT400021234	Potato	nucleus	35.69	35.69
KRH61515	Soybean	nucleus	36.83	34.95
TraesCS5B01G440700.1	Wheat	nucleus	34.84	34.84
TraesCS7B01G272500.1	Wheat	nucleus	25.5	34.22
CDX83217	Canola	nucleus	35.98	34.05
TraesCS1B01G396000.1	Wheat	nucleus	33.99	33.52
TraesCS2B01G105100.1	Wheat	nucleus	34.84	30.37
TraesCS3B01G425200.1	Wheat	nucleus	24.93	28.95
TraesCS3B01G255600.1	Wheat	nucleus	25.78	28.0
TraesCS3B01G438900.1	Wheat	nucleus	33.14	27.02
TraesCS4B01G239700.1	Wheat	nucleus	28.61	26.3
TraesCS6B01G127000.1	Wheat	nucleus	29.18	22.64
TraesCS5B01G556200.1	Wheat	nucleus	33.14	22.12
TraesCS2B01G232000.2	Wheat	nucleus	29.18	21.68
TraesCS3B01G323800.1	Wheat	nucleus	23.8	19.05

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0001666	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009408	GO:GO:0009628	GO:GO:0009644	GO:GO:0009719	GO:GO:0009987
GO:GO:0010200	GO:GO:0010286	GO:GO:0034605	GO:GO:0034620	GO:GO:0042542	GO:GO:0043565
GO:GO:0044212	GO:GO:0045893	GO:GO:0071456	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388
PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF259	SMART:SM00415
SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS7B01G267300	EnsemblPlants:TraesCS7B01G267300.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chr7B:-:490432075..490433223

Molecular Weight (calculated)

38180.0 Da

IEP (calculated)

4.616

GRAVY (calculated)

-0.311

Length

353 amino acids

Sequence
(BLAST)

001: MDSAAAVTMD IKQEEPEMVV LDDDNDGDAG CCRAPTPLDL AAAAAVAPFL AKTFDMVEDP ATDAVVSWGA ARNSFVVWDP HAFAARLLPR HFKHANFSSF
101: LRQLNTYGFR KVNPDRWEFA NTGFLGGQRH LLAGIRRRRG ADTARRPAAA LSPSSCAEGA GGFGPVEGEL EQLRRDREAL KRELAGLKRQ QEEARATLLD
201: MERRVQGTER RQEQCKAFLA RAVRNPAFLA NLARRNGLTA AAPAPAVDGK KKRRLLDVIP SPPPAEDGFT FEELALAAGV VEEAAAPTQG AGAGGVTTDM
301: IWYELLEEGQ AEIDVDVEDL VAAAGDMEPW GFGAEEVQDL MQQIDSFACS PSC

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.