Factsheet for Zm00001d046204_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d024903_P001
Zm00001d044259_P001
Zm00001d046204_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26150.1	Zm00001d044259_P001	AT2G26150.1	21510947
AT2G26150.1	Zm00001d046204_P001	AT2G26150.1	21510947
AT2G26150.1	Zm00001d024903_P001	AT5G52640.1	19366428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20211	Sorghum	nucleus	80.27	70.26
Os06t0565200-00	Rice	nucleus	58.63	64.65
TraesCS7B01G267300.1	Wheat	nucleus	55.07	56.94
TraesCS7A01G360400.1	Wheat	nucleus	54.79	55.87
HORVU7Hr1G087690.1	Barley	nucleus	53.97	53.97
GSMUA_Achr6P00960_001	Banana	nucleus	38.08	44.41
GSMUA_Achr2P16660_001	Banana	nucleus	33.15	44.32
KRH05436	Soybean	nucleus	37.26	38.31
PGSC0003DMT400021234	Potato	nucleus	36.71	37.96
KRH15573	Soybean	nucleus	36.99	37.09
Zm00001d043536_P001	Maize	nucleus	25.21	36.95
AT2G26150.1	Thale cress	nucleus	34.52	36.52
CDY21503	Canola	nucleus	34.79	36.39
Zm00001d016255_P001	Maize	nucleus	25.48	36.19
VIT_04s0008g01110.t01	Wine grape	nucleus	38.08	35.82
Bra000557.1-P	Field mustard	nucleus	33.7	35.34
Zm00001d032923_P002	Maize	nucleus	33.97	34.73
KRH61515	Soybean	nucleus	35.34	34.68
CDX83217	Canola	nucleus	33.97	33.24
Zm00001d046299_P001	Maize	nucleus	23.84	32.58
Zm00001d027757_P001	Maize	nucleus	34.25	32.55
Zm00001d033987_P001	Maize	nucleus	32.88	32.34
Zm00001d018941_P001	Maize	nucleus	33.15	32.27
Zm00001d044168_P001	Maize	nucleus	25.75	28.4
Zm00001d044259_P001	Maize	plastid	25.48	24.67
Zm00001d011406_P001	Maize	nucleus	26.03	24.55
Zm00001d016674_P001	Maize	nucleus	31.23	22.44
Zm00001d034886_P001	Maize	nucleus	30.96	21.44
Zm00001d048041_P004	Maize	nucleus	26.03	21.02
Zm00001d012823_P001	Maize	nucleus	31.51	20.68
Zm00001d012749_P001	Maize	nucleus	23.84	20.09
Zm00001d010812_P001	Maize	nucleus	23.84	19.38
Zm00001d038746_P001	Maize	nucleus	24.38	18.98
Zm00001d016520_P001	Maize	nucleus	26.3	18.18
Zm00001d034433_P003	Maize	nucleus	30.41	17.87

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ProteinID:AQL03845.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:K7VH39
PFAM:PF00447	PRINTS:PR00056	PANTHER:PTHR10015	PANTHER:PTHR10015:SF259	SMART:SM00415	SUPFAM:SSF46785
UniParc:UPI0002210D3B	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d046204	EnsemblPlants:Zm00001d046204_P001	EnsemblPlants:Zm00001d046204_T001
SEG:seg	:	:	:	:	:

Description

HSF-transcription factor 12Heat shock factor protein HSF30

Coordinates

chr9:-:71750080..71751360

Molecular Weight (calculated)

39947.8 Da

IEP (calculated)

4.942

GRAVY (calculated)

-0.363

Length

365 amino acids

Sequence
(BLAST)

001: MERPDVTVKQ EEEDEVVVVL DGDGDACGHW PGAGAAPEPW QTPVGSAVPP FLAKTFELVE DPATDAVISW GAARNSFVVW DPHAFAAGHL PRRFKHGNFS
101: TFLRQLNTYV RNHISQFVIN KHCNGFRKVS PDRWEFAHTD FLAGQRHLLV NIRRRRGGAA GSTASPSSAG AGGDRDSELE TLRRDREALA RELTRLRREQ
201: EEARAQLLDM ERRVRGTERR QEQCTAFLAR AIRNPAFLDG LLARRCGAHV EAGRKRRLLD AAAAGPDPAD VLDIEELAMA AGAEVGVASI PAVAAAQISN
301: TANATDMIWY ELLGEEQVEI DAEVHDLVAA AAAATDELAQ PWAEMDEKEV AELVRQIDCL ASPSP

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.