Factsheet for Zm00001d046299_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005647_P002
Zm00001d020213_P003
Zm00001d039489_P002
Zm00001d044324_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	Zm00001d039489_P002	AT1G19980.1	21798944
AT3G24520.1	Zm00001d005647_P002	AT3G01300.1	21798944
AT3G24520.1	Zm00001d020213_P003	AT3G01300.1	21798944
AT3G24520.1	Zm00001d044324_P001	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89919	Sorghum	nucleus	84.64	81.0
HORVU7Hr1G088920.3	Barley	nucleus	74.53	74.81
TraesCS7D01G367700.1	Wheat	nucleus	74.16	74.72
TraesCS7B01G272500.1	Wheat	nucleus	73.41	74.52
TraesCS7A01G355300.1	Wheat	nucleus	73.41	73.68
Zm00001d016255_P001	Maize	nucleus	58.05	60.31
GSMUA_Achr4P30990_001	Banana	nucleus	55.06	50.87
GSMUA_Achr10P...	Banana	nucleus	50.94	44.59
Zm00001d043536_P001	Maize	nucleus	33.33	35.74
Bra013253.1-P	Field mustard	nucleus	37.08	35.23
KRH39283	Soybean	nucleus	41.57	34.69
CDX93024	Canola	nucleus	39.7	34.64
Bra015050.1-P	Field mustard	nucleus	40.07	34.63
CDX77420	Canola	nucleus	40.45	34.39
CDY50608	Canola	nucleus	40.45	34.29
CDY39545	Canola	nucleus	40.07	34.08
AT3G24520.1	Thale cress	nucleus	40.82	33.03
Zm00001d044168_P001	Maize	nucleus	40.07	32.33
VIT_11s0016g03940.t01	Wine grape	nucleus	39.33	31.91
PGSC0003DMT400001025	Potato	nucleus	41.2	29.89
Solyc12g007070.1.1	Tomato	nucleus	41.2	29.81
CDY43158	Canola	nucleus	31.84	27.78
Zm00001d011406_P001	Maize	nucleus	40.07	27.65
Zm00001d018941_P001	Maize	nucleus	37.83	26.93
Zm00001d032923_P002	Maize	nucleus	35.21	26.33
Zm00001d046204_P001	Maize	nucleus	32.58	23.84
Zm00001d033987_P001	Maize	nucleus	32.58	23.45
Zm00001d027757_P001	Maize	nucleus	33.71	23.44
Zm00001d010812_P001	Maize	nucleus	31.46	18.71
Zm00001d034886_P001	Maize	nucleus	36.33	18.41
Zm00001d048041_P004	Maize	nucleus	31.09	18.36
Zm00001d044259_P001	Maize	plastid	25.84	18.3
Zm00001d038746_P001	Maize	nucleus	31.84	18.12
Zm00001d012749_P001	Maize	nucleus	29.21	18.01
Zm00001d012823_P001	Maize	nucleus	35.58	17.09
Zm00001d016674_P001	Maize	nucleus	31.84	16.73
Zm00001d016520_P001	Maize	nucleus	32.96	16.67
Zm00001d034433_P003	Maize	nucleus	35.96	15.46
CDY43157	Canola	cytosol	0.37	1.11

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:101202695	MapMan:15.5.13	ProteinID:AQL04052.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:K7V9Y4
PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF257	SMART:SM00415
SUPFAM:SSF46785	UniParc:UPI00022184D8	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d046299	EnsemblPlants:Zm00001d046299_P001
EnsemblPlants:Zm00001d046299_T001	SEG:seg	:	:	:	:

Description

HSF-transcription factor 28HSF28 HSF type transcription factor

Coordinates

chr9:+:79124493..79126324

Molecular Weight (calculated)

28330.4 Da

IEP (calculated)

7.890

GRAVY (calculated)

-0.228

Length

267 amino acids

Sequence
(BLAST)

001: MAAGGGGGSP APFVWKTYTM VEDPGTAGVI GWGSGNNSFV VADPFVFSQT LLPAHFKHNN FSSFVRQLNT YGFRKVDPDR WEFAHASFLR GQTHLLRNIV
101: RRGSSAAGAG GGKRKDASPT ELASGDDMTM VATEVVRLKQ EQRAIDDRVA SMWRRVQETE RRPKQMLAFL LKVVGDRDRL HRLVGDAPVP DNGFASGGAA
201: EPPAAEVGEK RARLLLDGDS MVALGPEAVD FAGFYSGGGA FGDVAVDAAA GSRGGGFSFA FGVDAGY

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.