Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013253.1-P | Field mustard | nucleus | 86.35 | 96.8 |
| CDX93024 | Canola | nucleus | 93.65 | 96.41 |
| CDX77420 | Canola | nucleus | 86.98 | 87.26 |
| CDY39545 | Canola | nucleus | 85.71 | 85.99 |
| AT3G24520.1 | Thale cress | nucleus | 83.81 | 80.0 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 51.11 | 48.94 |
| HORVU7Hr1G034320.1 | Barley | nucleus, plastid | 20.63 | 48.51 |
| KRH39283 | Soybean | nucleus | 49.21 | 48.44 |
| HORVU7Hr1G055320.1 | Barley | mitochondrion, nucleus | 24.13 | 46.91 |
| HORVU2Hr1G043030.1 | Barley | nucleus | 21.27 | 43.23 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 30.79 | 41.99 |
| TraesCS3B01G314600.1 | Wheat | nucleus | 30.16 | 41.85 |
| Zm00001d016255_P001 | Maize | nucleus | 33.65 | 41.25 |
| Solyc12g007070.1.1 | Tomato | nucleus | 47.94 | 40.92 |
| Zm00001d046299_P001 | Maize | nucleus | 34.29 | 40.45 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 34.92 | 40.29 |
| TraesCS3A01G280800.1 | Wheat | nucleus | 30.16 | 40.25 |
| PGSC0003DMT400001025 | Potato | nucleus | 46.98 | 40.22 |
| TraesCSU01G127200.1 | Wheat | nucleus | 35.24 | 40.22 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 33.97 | 39.93 |
| TraesCS3D01G280600.1 | Wheat | nucleus | 30.16 | 39.42 |
| KXG29862 | Sorghum | nucleus | 33.33 | 39.33 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 33.97 | 39.19 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 35.87 | 39.1 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 33.02 | 39.1 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 33.97 | 39.05 |
| TraesCSU01G127300.1 | Wheat | nucleus | 33.97 | 38.91 |
| TraesCS4D01G358900.1 | Wheat | nucleus | 33.97 | 38.77 |
| Zm00001d043536_P001 | Maize | nucleus | 30.48 | 38.55 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 27.94 | 38.43 |
| Os01t0733200-01 | Rice | nucleus | 30.48 | 38.4 |
| EER89919 | Sorghum | nucleus | 33.97 | 38.35 |
| HORVU7Hr1G088920.3 | Barley | nucleus | 32.38 | 38.35 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 33.33 | 38.32 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 33.33 | 38.18 |
| TraesCS7D01G367700.1 | Wheat | nucleus | 32.06 | 38.11 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 31.75 | 38.02 |
| KXG33312 | Sorghum | nucleus | 31.11 | 37.69 |
| HORVU7Hr1G119990.1 | Barley | nucleus | 28.89 | 37.45 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 34.6 | 36.7 |
| Os02t0232000-01 | Rice | nucleus | 34.6 | 36.58 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 31.75 | 36.23 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 29.52 | 35.5 |
| GSMUA_Achr7P24790_001 | Banana | nucleus | 23.17 | 34.93 |
| GSMUA_Achr10P... | Banana | nucleus | 32.7 | 33.77 |
| HORVU3Hr1G088890.2 | Barley | nucleus | 29.84 | 32.53 |
| CDY14893 | Canola | nucleus | 26.67 | 32.06 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 33.65 | 31.55 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 32.38 | 31.48 |
| TraesCS3D01G385900.1 | Wheat | nucleus | 29.52 | 30.39 |
| TraesCS3B01G425200.1 | Wheat | nucleus | 29.21 | 30.26 |
| TraesCS3A01G393200.1 | Wheat | nucleus | 30.16 | 30.25 |
| CDY29054 | Canola | nucleus | 25.4 | 30.19 |
| TraesCS3A01G393100.1 | Wheat | nucleus | 26.98 | 30.14 |
| Os01t0625300-01 | Rice | nucleus | 32.38 | 30.09 |
| TraesCS3D01G386000.1 | Wheat | nucleus | 29.84 | 29.94 |
| Zm00001d044168_P001 | Maize | nucleus | 31.43 | 29.91 |
| TraesCS3D01G227200.1 | Wheat | nucleus | 30.48 | 29.91 |
| TraesCS3A01G229000.1 | Wheat | nucleus | 30.79 | 29.85 |
| CDX90626 | Canola | nucleus | 25.4 | 29.74 |
| CDX94887 | Canola | nucleus | 25.4 | 29.63 |
| TraesCS3B01G255600.1 | Wheat | nucleus | 30.48 | 29.54 |
| CDY43158 | Canola | nucleus | 28.57 | 29.41 |
| HORVU3Hr1G055960.1 | Barley | nucleus | 30.48 | 29.36 |
| CDX95313 | Canola | nucleus | 24.44 | 28.73 |
| CDX90627 | Canola | nucleus | 26.03 | 28.57 |
| HORVU3Hr1G069590.4 | Barley | nucleus, plastid | 21.27 | 28.27 |
| CDY21503 | Canola | nucleus | 31.11 | 28.08 |
| CDX76693 | Canola | nucleus | 25.08 | 27.72 |
| CDY11470 | Canola | nucleus | 25.08 | 27.72 |
| CDX94884 | Canola | nucleus | 24.13 | 26.48 |
| EES01103 | Sorghum | nucleus | 30.48 | 26.3 |
| Zm00001d011406_P001 | Maize | nucleus | 31.75 | 25.84 |
| CDX83217 | Canola | nucleus | 30.48 | 25.74 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 29.21 | 25.34 |
| CDY10311 | Canola | nucleus | 31.11 | 25.26 |
| CDY10674 | Canola | nucleus | 31.11 | 25.19 |
| CDX70290 | Canola | nucleus | 28.89 | 25.07 |
| CDY34229 | Canola | nucleus | 29.84 | 24.8 |
| CDY13041 | Canola | nucleus | 24.13 | 24.76 |
| CDY46607 | Canola | nucleus | 28.25 | 23.99 |
| CDY46606 | Canola | nucleus | 28.89 | 23.76 |
| CDX92958 | Canola | nucleus | 25.71 | 23.55 |
| CDX78797 | Canola | nucleus | 31.75 | 23.26 |
| CDY10361 | Canola | nucleus | 29.52 | 23.19 |
| CDY23108 | Canola | nucleus | 24.76 | 22.94 |
| CDY60785 | Canola | nucleus | 31.75 | 22.88 |
| CDY16977 | Canola | nucleus | 30.79 | 22.0 |
| CDY28731 | Canola | nucleus | 30.16 | 21.79 |
| CDY58547 | Canola | nucleus | 30.79 | 21.37 |
| CDY09259 | Canola | nucleus | 24.44 | 21.27 |
| CDX74228 | Canola | nucleus | 30.48 | 21.1 |
| CDX85486 | Canola | nucleus | 29.52 | 21.04 |
| CDX76506 | Canola | nucleus | 24.44 | 21.04 |
| CDX92026 | Canola | nucleus | 29.84 | 20.98 |
| CDY38085 | Canola | nucleus | 29.21 | 20.96 |
| CDX93842 | Canola | nucleus | 31.75 | 20.53 |
| CDY01288 | Canola | nucleus | 31.75 | 20.33 |
| CDX99415 | Canola | nucleus | 24.76 | 20.31 |
| CDY69818 | Canola | nucleus | 25.08 | 20.26 |
| CDY01562 | Canola | nucleus | 25.08 | 20.1 |
| CDX69418 | Canola | nucleus | 29.84 | 19.3 |
| CDY01180 | Canola | nucleus | 28.57 | 18.87 |
| CDY12723 | Canola | nucleus | 27.94 | 18.53 |
| CDY44649 | Canola | nucleus | 23.81 | 15.79 |
| CDX78902 | Canola | nucleus | 24.76 | 15.09 |
| CDY43157 | Canola | cytosol | 1.9 | 6.67 |
| CDX84097 | Canola | nucleus | 4.76 | 5.58 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:A0A078INH4 | UniProt:A0A078INH4 | EnsemblPlants:CDY50608 | ProteinID:CDY50608 |
| ProteinID:CDY50608.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00097134001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 |
| ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF187 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EE79F1 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaC03g43990DBnaC03g43990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INH4]
Coordinates
chrLK032926:+:14351..15298
Molecular Weight (calculated)
35737.0 Da
IEP (calculated)
6.389
GRAVY (calculated)
-0.732
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDKNNNTS STNTNVIAPF VAKTYQMVND PSTDWLITWG PAHNSFIVAD PLDFSQRILP AYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEHFLRGQK
101: HLLKNIARRK HARGMTDAED GEIVKEIERL RDEQRELELE IQRMNQRIEA TEKRPEQMMA FLYKVADDPD FLPRMMLEKE RTKQLVSDKK KRRVTVKSEE
201: GAEEEERVFG VVSPSPSPSP ENSIGWVVPM QRQGTFGSYY NETGMVTNSM ISTSSKSSSL TSTLSLLESV NRGGGGGCGS IQGETRDKEA ATFGGVVESN
301: PQTPPYPFSL FRGGF
101: HLLKNIARRK HARGMTDAED GEIVKEIERL RDEQRELELE IQRMNQRIEA TEKRPEQMMA FLYKVADDPD FLPRMMLEKE RTKQLVSDKK KRRVTVKSEE
201: GAEEEERVFG VVSPSPSPSP ENSIGWVVPM QRQGTFGSYY NETGMVTNSM ISTSSKSSSL TSTLSLLESV NRGGGGGCGS IQGETRDKEA ATFGGVVESN
301: PQTPPYPFSL FRGGF
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.