Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78797 | Canola | nucleus | 96.8 | 98.37 |
| Bra040179.1-P | Field mustard | nucleus | 96.8 | 97.92 |
| AT4G17750.1 | Thale cress | nucleus | 80.09 | 70.71 |
| CDY43158 | Canola | nucleus | 35.7 | 50.98 |
| VIT_02s0012g01810.t01 | Wine grape | nucleus | 52.86 | 46.57 |
| KRH74387 | Soybean | nucleus | 51.03 | 45.51 |
| KRH07474 | Soybean | nucleus | 52.86 | 45.29 |
| GSMUA_Achr4P04500_001 | Banana | nucleus | 45.31 | 45.1 |
| KRH39566 | Soybean | nucleus | 51.26 | 44.8 |
| CDY14893 | Canola | nucleus | 25.63 | 42.75 |
| CDX93842 | Canola | nucleus | 47.14 | 42.3 |
| CDY01288 | Canola | nucleus | 47.37 | 42.07 |
| CDY58547 | Canola | nucleus | 43.71 | 42.07 |
| CDX95313 | Canola | nucleus | 25.63 | 41.79 |
| PGSC0003DMT400046000 | Potato | nucleus | 48.05 | 41.34 |
| CDX90626 | Canola | nucleus | 25.4 | 41.26 |
| CDX85486 | Canola | nucleus | 41.65 | 41.18 |
| CDY29054 | Canola | nucleus | 24.94 | 41.13 |
| Solyc08g005170.2.1 | Tomato | nucleus | 49.2 | 40.8 |
| GSMUA_Achr3P27600_001 | Banana | nucleus | 39.59 | 40.61 |
| CDX94887 | Canola | nucleus | 24.94 | 40.37 |
| CDX92026 | Canola | nucleus | 41.19 | 40.18 |
| CDY38085 | Canola | nucleus | 40.27 | 40.09 |
| Solyc08g076590.2.1 | Tomato | nucleus | 44.85 | 40.0 |
| CDX74228 | Canola | nucleus | 41.42 | 39.78 |
| PGSC0003DMT400038381 | Potato | nucleus | 45.08 | 39.56 |
| Os03t0854500-01 | Rice | nucleus | 45.54 | 39.33 |
| CDY28731 | Canola | nucleus | 39.13 | 39.22 |
| GSMUA_Achr4P17040_001 | Banana | nucleus | 43.71 | 39.22 |
| TraesCS4A01G322300.1 | Wheat | nucleus | 46.68 | 39.16 |
| TraesCS5D01G553300.1 | Wheat | nucleus | 46.68 | 39.08 |
| CDY21503 | Canola | nucleus | 30.66 | 38.4 |
| TraesCS5B01G556200.1 | Wheat | nucleus | 46.45 | 38.37 |
| CDY34229 | Canola | nucleus | 33.18 | 38.26 |
| EER93074 | Sorghum | nucleus | 46.0 | 38.14 |
| CDY10674 | Canola | nucleus | 33.87 | 38.05 |
| CDY16977 | Canola | nucleus | 38.22 | 37.87 |
| Zm00001d034886_P001 | Maize | nucleus | 45.54 | 37.76 |
| CDX90627 | Canola | nucleus | 24.49 | 37.28 |
| CDX69418 | Canola | nucleus | 41.42 | 37.17 |
| CDY10311 | Canola | nucleus | 32.95 | 37.11 |
| CDY46607 | Canola | nucleus | 31.35 | 36.93 |
| CDY46606 | Canola | nucleus | 32.27 | 36.81 |
| CDY44649 | Canola | nucleus | 39.36 | 36.21 |
| CDY11470 | Canola | nucleus | 23.57 | 36.14 |
| CDX94884 | Canola | nucleus | 23.57 | 35.89 |
| CDX76693 | Canola | nucleus | 23.34 | 35.79 |
| Zm00001d012823_P001 | Maize | nucleus | 45.08 | 35.43 |
| CDX83217 | Canola | nucleus | 30.21 | 35.39 |
| HORVU5Hr1G123770.1 | Barley | nucleus | 46.45 | 35.37 |
| CDY13041 | Canola | nucleus | 24.71 | 35.18 |
| CDX92958 | Canola | nucleus | 27.69 | 35.17 |
| CDY23108 | Canola | nucleus | 25.63 | 32.94 |
| CDY09259 | Canola | nucleus | 26.77 | 32.32 |
| CDX93024 | Canola | nucleus | 22.43 | 32.03 |
| CDX77420 | Canola | nucleus | 22.88 | 31.85 |
| CDY50608 | Canola | nucleus | 22.88 | 31.75 |
| CDY39545 | Canola | nucleus | 22.43 | 31.21 |
| CDX76506 | Canola | nucleus | 26.09 | 31.15 |
| CDX99415 | Canola | nucleus | 27.23 | 30.99 |
| CDX70290 | Canola | nucleus | 25.4 | 30.58 |
| CDY01562 | Canola | nucleus | 26.77 | 29.77 |
| CDY69818 | Canola | nucleus | 26.54 | 29.74 |
| CDY10361 | Canola | nucleus | 26.09 | 28.43 |
| CDY12723 | Canola | nucleus | 26.77 | 24.63 |
| CDY01180 | Canola | nucleus | 26.09 | 23.9 |
| CDX84097 | Canola | nucleus | 14.65 | 23.79 |
| CDX78902 | Canola | nucleus | 25.17 | 21.28 |
| CDY43157 | Canola | cytosol | 4.35 | 21.11 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | MapMan:26.4.2.1 | GO:A0A078J7R8 | UniProt:A0A078J7R8 | EnsemblPlants:CDY60785 |
| ProteinID:CDY60785 | ProteinID:CDY60785.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00030079001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 |
| PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF162 | SMART:SM00415 | SUPFAM:SSF46785 |
| UniParc:UPI0004EE3971 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
BnaCnng36910DBnaCnng36910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7R8]
Coordinates
chrLK033915:+:16148..17686
Molecular Weight (calculated)
48398.7 Da
IEP (calculated)
4.776
GRAVY (calculated)
-0.602
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDGVTGGDS KSGEATTAPP LRNPHPATLL GTNALPPPFL SKTYDMVEDP ASDAIVSWSP ANNSFVVWDP PEFSRSLLPR YFKHNNFSSF VRQLNTYGFR
101: KVDPDRWEFA NEGFLRGQKH LLKTISRRKS TQGHGSSSSS NPQSHQGHMA SLSSCVEVGK FGLEEEVEQL KRDKNVLMQE LVKLRQQQQS TDSKLQSMVK
201: SLQTMEQRQQ QIMSFLAKAV QNPTFLSQFI QKQTDSGNMH VTEASKKRRL TEDGTTAAAA ASDGQIVKYQ PIRSDSTMSM MWNMMNTDEK FPFSPNRDSG
301: VTFQEVLLPT TSGQSQAYAP ISSASTSLMP MIPPMPQESI SDSPTENYMN AEKDVSEAFI SPSPFLDGGS VPNQLEGLPQ DLDIDELMSN CDIFEEYLAQ
401: SPVFGDETTL ESSDANGGHV DKLIEELGHL TSETKQL
101: KVDPDRWEFA NEGFLRGQKH LLKTISRRKS TQGHGSSSSS NPQSHQGHMA SLSSCVEVGK FGLEEEVEQL KRDKNVLMQE LVKLRQQQQS TDSKLQSMVK
201: SLQTMEQRQQ QIMSFLAKAV QNPTFLSQFI QKQTDSGNMH VTEASKKRRL TEDGTTAAAA ASDGQIVKYQ PIRSDSTMSM MWNMMNTDEK FPFSPNRDSG
301: VTFQEVLLPT TSGQSQAYAP ISSASTSLMP MIPPMPQESI SDSPTENYMN AEKDVSEAFI SPSPFLDGGS VPNQLEGLPQ DLDIDELMSN CDIFEEYLAQ
401: SPVFGDETTL ESSDANGGHV DKLIEELGHL TSETKQL
001: MFVNFKYFSF FIRTKMDGVT GGGTNIGEAV TAPPPRNPHP ATLLNANSLP PPFLSKTYDM VEDPATDAIV SWSPTNNSFI VWDPPEFSRD LLPKYFKHNN
101: FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKKIS RRKSVQGHGS SSSNPQSQQL SQGQGSMAAL SSCVEVGKFG LEEEVEQLKR DKNVLMQELV
201: KLRQQQQTTD NKLQVLVKHL QVMEQRQQQI MSFLAKAVQN PTFLSQFIQK QTDSNMHVTE ANKKRRLRED STAATESNSH SHSLEASDGQ IVKYQPLRND
301: SMMWNMMKTD DKYPFLDGFS SPNQVSGVTL QEVLPITSGQ SQAYASVPSG QPLSYLPSTS TSLPDTIMPE TSQIPQLTRE SINDFPTENF MDTEKNVPEA
401: FISPSPFLDG GSVPIQLEGI PEDPEIDELM SNFEFLEEYM PESPVFGDAT TLENNNNNNN NNNNNNNNNN NNNTNGRHMD KLIEELGLLT SETEH
101: FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKKIS RRKSVQGHGS SSSNPQSQQL SQGQGSMAAL SSCVEVGKFG LEEEVEQLKR DKNVLMQELV
201: KLRQQQQTTD NKLQVLVKHL QVMEQRQQQI MSFLAKAVQN PTFLSQFIQK QTDSNMHVTE ANKKRRLRED STAATESNSH SHSLEASDGQ IVKYQPLRND
301: SMMWNMMKTD DKYPFLDGFS SPNQVSGVTL QEVLPITSGQ SQAYASVPSG QPLSYLPSTS TSLPDTIMPE TSQIPQLTRE SINDFPTENF MDTEKNVPEA
401: FISPSPFLDG GSVPIQLEGI PEDPEIDELM SNFEFLEEYM PESPVFGDAT TLENNNNNNN NNNNNNNNNN NNNTNGRHMD KLIEELGLLT SETEH
Arabidopsis Description
HSFA1AHeat stress transcription factor A-1a [Source:UniProtKB/Swiss-Prot;Acc:P41151]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.