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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX78797
CDY60785

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G41140.1 CDX78797 AT4G17750.1 18466301
AT2G41140.1 CDY60785 AT4G17750.1 18466301
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX79956 Canola cytosol 98.96 99.13
Bra004600.1-P Field mustard cytosol 98.44 98.61
CDY35427 Canola cytosol 92.56 94.36
CDY22505 Canola cytosol 92.56 94.19
AT2G41140.1 Thale cress cytosol 93.6 93.92
CDY47375 Canola cytosol, nucleus, plasma membrane 87.54 88.15
CDX76010 Canola cytosol 86.16 87.37
KRG95088 Soybean cytosol 60.9 84.62
KRH33063 Soybean endoplasmic reticulum, vacuole 47.92 81.23
GSMUA_Achr6P16020_001 Banana cytosol 59.69 80.42
KRH71707 Soybean cytosol 80.8 80.1
CDY57585 Canola cytosol, mitochondrion 57.27 79.95
Solyc10g078390.1.1 Tomato cytosol 78.2 78.75
Os07t0641200-01 Rice plasma membrane 35.64 78.63
PGSC0003DMT400021598 Potato mitochondrion 77.68 78.22
HORVU7Hr1G066710.3 Barley cytosol 23.01 77.78
HORVU6Hr1G016380.1 Barley cytosol 22.66 76.61
CDY06943 Canola cytosol 61.25 75.97
VIT_08s0040g01250.t01 Wine grape cytosol, plastid, vacuole 77.85 75.89
GSMUA_Achr10P... Banana cytosol 75.61 75.87
HORVU3Hr1G026700.1 Barley plasma membrane 18.34 75.71
Os03t0366200-01 Rice cytosol, plasma membrane 37.54 75.09
GSMUA_Achr6P23680_001 Banana cytosol 73.36 74.0
EER99788 Sorghum cytosol 75.78 73.86
TraesCS2A01G146200.2 Wheat cytosol 75.43 73.77
GSMUA_Achr3P18430_001 Banana cytosol 68.69 73.65
TraesCS2B01G171600.1 Wheat cytosol 75.43 73.52
TraesCS2D01G150800.1 Wheat cytosol 75.43 73.52
HORVU5Hr1G097280.1 Barley extracellular, plasma membrane 11.76 72.34
CDY69753 Canola cytosol, plastid 64.71 70.04
EER94810 Sorghum cytosol 71.45 69.76
HORVU1Hr1G005350.3 Barley endoplasmic reticulum, plasma membrane 23.18 69.43
CDY65651 Canola cytosol 70.24 69.4
CDY52824 Canola cytosol 71.28 69.36
CDY65016 Canola cytosol 70.93 69.02
Zm00001d047428_P001 Maize cytosol 70.59 68.23
CDX95464 Canola cytosol, plastid 64.36 62.84
CDY18568 Canola cytosol, plastid 64.53 62.79
CDX92303 Canola cytosol 64.19 62.25
Zm00001d022305_P001 Maize cytosol 64.01 62.08
CDX82311 Canola cytosol 63.49 61.99
CDX99267 Canola cytosol 63.84 61.91
Zm00001d007029_P001 Maize cytosol 63.67 61.54
CDY22990 Canola cytosol 63.15 61.45
Zm00001d029264_P004 Maize cytosol 70.93 61.19
CDX77233 Canola cytosol, plastid 61.94 60.58
CDY16510 Canola cytosol, plastid 61.94 60.07
CDY27530 Canola cytosol 58.65 56.88
CDY48019 Canola cytosol 58.65 56.88
CDY19836 Canola cytosol 56.75 56.55
CDX87128 Canola cytosol 56.57 56.38
CDX88104 Canola cytosol 55.54 55.06
CDX80445 Canola cytosol 55.36 54.89
CDY08129 Canola cytosol 56.06 54.45
CDY05930 Canola cytosol 55.88 54.01
HORVU2Hr1G025890.1 Barley cytosol 70.59 51.0
CDY00200 Canola cytosol 56.23 49.77
CDX86978 Canola cytosol 55.71 49.61
CDX87112 Canola cytosol 23.01 45.86
CDY45213 Canola plastid 41.52 45.2
CDY30782 Canola plastid 40.66 44.93
CDY18593 Canola plastid 41.0 43.97
CDY38141 Canola cytosol, plastid 43.6 43.9
CDY63401 Canola cytosol, plastid 43.6 43.75
CDX72575 Canola cytosol 40.66 43.44
CDX81407 Canola plastid 40.66 43.44
CDY29208 Canola plastid 43.6 43.3
CDY47052 Canola cytosol 40.48 43.25
CDY07808 Canola plastid 43.43 42.98
CDY40640 Canola cytosol 15.05 38.84
CDX92529 Canola cytosol 34.43 37.27
CDY42266 Canola cytosol 34.43 37.27
CDY44918 Canola cytosol 34.26 37.08
CDY53966 Canola cytosol 34.08 37.03
CDX97205 Canola cytosol 34.26 37.01
CDY14001 Canola cytosol 33.91 36.98
CDY48773 Canola cytosol 30.1 36.71
CDX67695 Canola cytosol 33.22 35.82
CDY33817 Canola cytosol 33.22 35.69
CDX72022 Canola cytosol 33.05 35.37
CDY06098 Canola cytosol 33.05 35.3
CDX73684 Canola cytosol 32.18 35.23
CDX78044 Canola cytosol, nucleus, plasma membrane 32.01 35.04
CDY23165 Canola cytosol 32.01 35.04
CDX95303 Canola cytosol 31.83 34.85
CDY29049 Canola cytosol 31.83 34.85
CDX90631 Canola cytosol 31.66 34.59
CDY45391 Canola cytosol 32.53 34.43
CDY14793 Canola cytosol 29.07 34.43
CDX79906 Canola cytosol 31.66 34.4
CDX81903 Canola cytosol, plastid 32.18 34.25
CDX73108 Canola cytosol 32.35 34.19
CDY21691 Canola cytosol, plastid 32.35 34.19
CDY10809 Canola cytosol 31.66 34.08
CDY06900 Canola cytosol 31.14 33.9
CDY34489 Canola cytosol 31.49 33.83
CDY16652 Canola cytosol 27.34 33.55
CDX84782 Canola cytosol, plastid 31.66 33.27
CDY23939 Canola cytosol, plastid 31.66 33.27
CDY19084 Canola plastid 32.35 33.04
CDY71104 Canola cytosol 7.79 32.14
CDY15391 Canola plastid 32.18 32.07
CDY26714 Canola cytosol 32.18 30.54
CDY19259 Canola cytosol, plastid 32.18 30.34
CDY10803 Canola cytosol 20.76 26.97
CDX94570 Canola cytosol 26.99 21.02
CDY24762 Canola cytosol 7.79 19.91
Protein Annotations
Gene3D:1.10.238.10Gene3D:1.10.510.10MapMan:18.4.5.5Gene3D:3.30.200.20GO:A0A078GGV1UniProt:A0A078GGV1
EnsemblPlants:CDY23873ProteinID:CDY23873ProteinID:CDY23873.1InterPro:EF-hand-dom_pairGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0006464GO:GO:0006468
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00024306001InterPro:IPR000719InterPro:Kinase-like_dom_sfPFAM:PF00069ScanProsite:PS00107ScanProsite:PS00108
PFscan:PS50011PANTHER:PTHR24349PANTHER:PTHR24349:SF92InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220
SUPFAM:SSF47473SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI0001B33DE2SEG:seg:
Description
BnaC04g01640DBnaC04g01640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGV1]
Coordinates
chrLK032150:-:369855..373457
Molecular Weight (calculated)
64470.6 Da
IEP (calculated)
8.499
GRAVY (calculated)
-0.256
Length
578 amino acids
Sequence
(BLAST)
001: MGMCHGKPIE HQSKQSLPSP DEPQPPPPPP PAAKSSGFPF YSPSPLPSLF KSSPSVSSSA SSTPLRIFKR PFPPPSPAKH IRAFLARRHG SSAKPPSEVS
101: IPEGEEFEIG LDKSFGFSKH FASHYEIDGE VGRGHFGYTC SAKGKKGSLK GQEVAVKVIP KSKMTTAIAI EDVSREVKIL RALTGHKNLV QFYDAFEDDE
201: NVYIVMELCK GGELLDKILQ RGGKYSEDDA KQVMVQILSV VAYCHLQGVV HRDLKPENFL FSTKDETSPL KAIDFGLSDY VKPDERLNDI VGSAYYVAPE
301: VLHRTYGTEA DMWSIGVIAY ILLCGSRPFW ARTESGIFRA VLKAEPNFEE APWPSLSPDA VDFVKKLLNK DYRKRLTAAQ ALCHPWLVAS HELKIPSDMI
401: IYKLVKVYIM STSLRKSALQ ALAKTLTVPQ LAYLREQFTL LGPSKNGYIS MQNYKTAILK TATDATKDSR VLDFVHMISC LQYKKLDFEE FCASALSVYQ
501: LEAMETWEQH ARRAYELFEK DGNRPIMIEE LASELGLGPS VPVHVVLQDW IRHSDGKLSF LGFVRLLHGV SSRTLQKA
Best Arabidopsis Sequence Match ( AT2G41140.1 )
(BLAST)
001: MGICHGKPVE QQSKSLPVSG ETNEAPTNSQ PPAKSSGFPF YSPSPVPSLF KSSPSVSSSV SSTPLRIFKR PFPPPSPAKH IRAFLARRYG SVKPNEVSIP
101: EGKECEIGLD KSFGFSKQFA SHYEIDGEVG RGHFGYTCSA KGKKGSLKGQ EVAVKVIPKS KMTTAIAIED VSREVKMLRA LTGHKNLVQF YDAFEDDENV
201: YIVMELCKGG ELLDKILQRG GKYSEDDAKK VMVQILSVVA YCHLQGVVHR DLKPENFLFS TKDETSPLKA IDFGLSDYVK PDERLNDIVG SAYYVAPEVL
301: HRTYGTEADM WSIGVIAYIL LCGSRPFWAR TESGIFRAVL KAEPNFEEAP WPSLSPEAVD FVKRLLNKDY RKRLTAAQAL CHPWLVGSHE LKIPSDMIIY
401: KLVKVYIMST SLRKSALAAL AKTLTVPQLA YLREQFTLLG PSKNGYISMQ NYKTAILKSS TDAMKDSRVF DFVHMISCLQ YKKLDFEEFC ASALSVYQLE
501: AMETWEQHAR RAYELFEKDG NRPIMIEELA SELGLGPSVP VHVVLQDWIR HSDGKLSFLG FVRLLHGVSS RTLQKA
Arabidopsis Description
CRK1CDPK-related kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O80673]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.