Factsheet for VIT_08s0040g01250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

nucleus 3
plastid 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01810.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41140.1	VIT_02s0012g01810.t01	AT4G17750.1	18466301

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95088	Soybean	cytosol	60.54	86.3
Solyc10g078390.1.1	Tomato	cytosol	81.62	84.32
KRH33063	Soybean	endoplasmic reticulum, vacuole	48.4	84.16
PGSC0003DMT400021598	Potato	mitochondrion	81.28	83.97
KRH71707	Soybean	cytosol	81.79	83.19
GSMUA_Achr6P16020_001	Banana	cytosol	59.53	82.28
HORVU7Hr1G066710.3	Barley	cytosol	23.1	80.12
HORVU6Hr1G016380.1	Barley	cytosol	23.1	80.12
CDY22505	Canola	cytosol	75.89	79.23
AT3G56760.1	Thale cress	cytosol	77.07	79.2
AT2G41140.1	Thale cress	cytosol	76.9	79.17
CDY35427	Canola	cytosol	75.55	79.01
Bra000215.1-P	Field mustard	cytosol	75.38	78.84
GSMUA_Achr10P...	Banana	cytosol	76.39	78.65
Bra004600.1-P	Field mustard	cytosol	76.22	78.34
CDX79956	Canola	cytosol	76.05	78.16
CDY23873	Canola	cytosol	75.89	77.85
Os07t0641200-01	Rice	plasma membrane	34.23	77.48
GSMUA_Achr6P23680_001	Banana	cytosol	73.36	75.92
CDY47375	Canola	cytosol, nucleus, plasma membrane	73.36	75.78
HORVU3Hr1G026700.1	Barley	plasma membrane	17.88	75.71
CDX76010	Canola	cytosol	72.68	75.61
EER99788	Sorghum	cytosol	75.55	75.55
Bra014673.1-P	Field mustard	cytosol, nucleus, plasma membrane	73.19	75.48
TraesCS2A01G146200.2	Wheat	cytosol	75.21	75.47
TraesCS2B01G171600.1	Wheat	cytosol	75.38	75.38
TraesCS2D01G150800.1	Wheat	cytosol	75.38	75.38
GSMUA_Achr3P18430_001	Banana	cytosol	67.96	74.77
Os03t0366200-01	Rice	cytosol, plasma membrane	36.26	74.39
VIT_00s0379g00070.t01	Wine grape	cytosol, plasma membrane	39.97	73.83
HORVU5Hr1G097280.1	Barley	extracellular, plasma membrane	11.64	73.4
HORVU1Hr1G005350.3	Barley	endoplasmic reticulum, plasma membrane	23.61	72.54
CDY57585	Canola	cytosol, mitochondrion	49.41	70.77
Bra016950.1-P	Field mustard	cytosol	58.68	70.73
VIT_03s0063g00940.t01	Wine grape	cytosol	69.48	70.55
EER94810	Sorghum	cytosol	70.32	70.44
Zm00001d047428_P001	Maize	cytosol	69.98	69.4
CDY06943	Canola	cytosol	52.61	66.95
Zm00001d022305_P001	Maize	cytosol	64.76	64.43
Zm00001d007029_P001	Maize	cytosol	64.25	63.71
Zm00001d029264_P004	Maize	cytosol	70.15	62.09
VIT_15s0048g02840.t01	Wine grape	cytosol	58.68	58.88
VIT_16s0098g01140.t01	Wine grape	cytosol	57.0	57.09
HORVU2Hr1G025890.1	Barley	cytosol	69.98	51.88
VIT_04s0023g03420.t01	Wine grape	plastid	41.99	44.62
VIT_17s0000g05520.t01	Wine grape	cytosol	27.66	38.05
VIT_06s0004g02300.t01	Wine grape	cytosol	32.38	37.07
VIT_08s0007g08300.t01	Wine grape	cytosol	32.21	36.31
VIT_08s0105g00390.t01	Wine grape	cytosol	31.53	35.48
VIT_05s0102g00170.t01	Wine grape	cytosol	31.87	34.12
VIT_00s0577g00010.t01	Wine grape	plasma membrane	28.84	31.67

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	EntrezGene:100246588	wikigene:100246588	MapMan:18.4.5.5	Gene3D:3.30.200.20
ProteinID:CBI32784	ProteinID:CBI32784.3	UniProt:D7TQR4	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	EMBL:FN596008
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004683	GO:GO:0005488
GO:GO:0005509	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009738
GO:GO:0009931	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105
GO:GO:0019538	GO:GO:0035556	GO:GO:0046777	InterPro:IPR000719	InterPro:IPR002048	InterPro:Kinase-like_dom_sf
EntrezGene:LOC100246588	wikigene:LOC100246588	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS50222	PANTHER:PTHR24349	PANTHER:PTHR24349:SF92	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF47473	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC53219	UniParc:UPI0001BE3F84	ArrayExpress:VIT_08s0040g01250
EnsemblPlantsGene:VIT_08s0040g01250	EnsemblPlants:VIT_08s0040g01250.t01	unigene:Vvi.3449	RefSeq:XP_002282577	RefSeq:XP_002282577.1	SEG:seg

Description

No Description!

Coordinates

chr8:+:12291992..12300356

Molecular Weight (calculated)

66110.3 Da

IEP (calculated)

8.951

GRAVY (calculated)

-0.222

Length

593 amino acids

Sequence
(BLAST)

001: MFVVCFNNVA SQISKLGWHN LTAGKPIENP QTQSQDLIIP GDGELSTNTQ TTKTPKFPFY SPSPLPSGFK NSPANSSVSS TPLRIFKRPF PPPSPAKHIR
101: ALLARRHGSV KPNEATIPEG NECEVGLDKN FGFSKQFVAH YEMGEEVGRG HFGYTSSAKA KKGSLKGQDV AVKVIAKSKM TTAIAIEDVR REVKILRALT
201: GHKNLVQFYE AYEDDDNVYI VMELCRGGEL LDRILARGGK YSEEDAKAVM VQILNVTAFC HLQGVVHRDL KPENFLFISK EENSPLKAID FGLSDYVKPD
301: ERLNDIVGSA YYVAPEVLHR SYGTEADMWS VGVIAYILLC GSRPFWARTE SGIFKAVLKA DPSFDEAPWP SLSSDAIDFV KRLLNKDYRK RLTAAQALSH
401: PWLANYHDVK IPLDMIVYKL VKAYIFSSSL RKSALAALAK TLSIAQLAYF REQFTLLGPN KSGFVSLQNF KTAVTKNSTD AIKDSRVLEY VSMVGSLQYR
501: KLDFEEFCAA AISVLQLEGM ESWEQHARRG YELFEKDGNR PIMIEELASE LGLSPSVPVH VVLQDWIRHS DGKLSFLGFV RLLHGPSRAF PKA

Best Arabidopsis Sequence Match ( AT2G41140.1 )
(BLAST)

001: MGICHGKPVE QQSKSLPVSG ETNEAPTNSQ PPAKSSGFPF YSPSPVPSLF KSSPSVSSSV SSTPLRIFKR PFPPPSPAKH IRAFLARRYG SVKPNEVSIP
101: EGKECEIGLD KSFGFSKQFA SHYEIDGEVG RGHFGYTCSA KGKKGSLKGQ EVAVKVIPKS KMTTAIAIED VSREVKMLRA LTGHKNLVQF YDAFEDDENV
201: YIVMELCKGG ELLDKILQRG GKYSEDDAKK VMVQILSVVA YCHLQGVVHR DLKPENFLFS TKDETSPLKA IDFGLSDYVK PDERLNDIVG SAYYVAPEVL
301: HRTYGTEADM WSIGVIAYIL LCGSRPFWAR TESGIFRAVL KAEPNFEEAP WPSLSPEAVD FVKRLLNKDY RKRLTAAQAL CHPWLVGSHE LKIPSDMIIY
401: KLVKVYIMST SLRKSALAAL AKTLTVPQLA YLREQFTLLG PSKNGYISMQ NYKTAILKSS TDAMKDSRVF DFVHMISCLQ YKKLDFEEFC ASALSVYQLE
501: AMETWEQHAR RAYELFEKDG NRPIMIEELA SELGLGPSVP VHVVLQDWIR HSDGKLSFLG FVRLLHGVSS RTLQKA

Arabidopsis Description

CRK1CDPK-related kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O80673]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.