Factsheet for VIT_17s0000g05520.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74740.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT1G74740.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT1G74740.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT1G74740.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT1G74740.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT1G74740.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT1G74740.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P17730_001	Banana	cytosol	77.73	83.13
PGSC0003DMT400034291	Potato	cytosol	86.54	69.33
KRH54494	Soybean	cytosol	88.4	69.15
KRH03406	Soybean	cytosol	86.77	69.13
Solyc03g113390.2.1	Tomato	cytosol	86.08	68.96
KRH56973	Soybean	cytosol	86.08	68.83
KRH63420	Soybean	cytosol	88.4	68.53
AT1G74740.1	Thale cress	cytosol	84.45	67.28
CDX81903	Canola	cytosol, plastid	83.76	66.48
CDY45391	Canola	cytosol	83.76	66.12
CDY21691	Canola	cytosol, plastid	83.76	66.0
CDX73108	Canola	cytosol	83.76	66.0
Bra015896.1-P	Field mustard	cytosol	83.53	65.93
AT1G18890.1	Thale cress	cytosol, plastid	82.6	65.32
Bra031055.1-P	Field mustard	cytosol, plastid	80.28	65.16
Bra025696.1-P	Field mustard	cytosol, plastid	76.8	62.69
VIT_08s0105g00390.t01	Wine grape	cytosol	73.32	59.96
CDY26714	Canola	cytosol	83.76	59.28
CDY19259	Canola	cytosol, plastid	83.06	58.4
Os03t0688300-01	Rice	plasma membrane	75.64	56.79
TraesCS4D01G027600.1	Wheat	plastid	74.94	56.67
VIT_08s0007g08300.t01	Wine grape	cytosol	69.14	56.65
TraesCS4A01G283400.1	Wheat	plastid	74.71	56.59
Zm00001d013527_P002	Maize	cytosol, plastid	75.41	55.56
EER93646	Sorghum	plastid	75.41	55.46
VIT_06s0004g02300.t01	Wine grape	cytosol	65.2	54.25
TraesCS4B01G030100.1	Wheat	plastid	74.71	53.67
HORVU4Hr1G004540.20	Barley	plastid	73.55	52.66
VIT_05s0102g00170.t01	Wine grape	cytosol	59.16	46.03
VIT_00s0379g00070.t01	Wine grape	cytosol, plasma membrane	28.07	37.69
VIT_04s0023g03420.t01	Wine grape	plastid	39.68	30.65
VIT_08s0040g01250.t01	Wine grape	cytosol, plastid, vacuole	38.05	27.66
VIT_03s0063g00940.t01	Wine grape	cytosol	36.89	27.23
VIT_15s0048g02840.t01	Wine grape	cytosol	35.5	25.89
VIT_16s0098g01140.t01	Wine grape	cytosol	34.34	25.0
VIT_00s0577g00010.t01	Wine grape	plasma membrane	22.51	17.96

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	EntrezGene:100246691	wikigene:100246691	MapMan:18.4.5.4	Gene3D:3.30.200.20
ProteinID:CCB43123	ProteinID:CCB43123.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	UniProt:F6GTB4
EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004683
GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005886	GO:GO:0006464
GO:GO:0006468	GO:GO:0006950	GO:GO:0006970	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009719	GO:GO:0009738	GO:GO:0009931
GO:GO:0009987	GO:GO:0010152	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105
GO:GO:0019538	GO:GO:0035556	GO:GO:0046777	GO:GO:1902584	InterPro:IPR000719	InterPro:IPR002048
InterPro:Kinase-like_dom_sf	EntrezGene:LOC100246691	wikigene:LOC100246691	PFAM:PF00069	PFAM:PF13499	PIRSF:PIRSF000654
ScanProsite:PS00018	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50222	PANTHER:PTHR24349	PANTHER:PTHR24349:SF167
InterPro:Prot_kinase_dom	SMART:SM00054	SMART:SM00220	SUPFAM:SSF47473	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
TIGR:TC59918	UniParc:UPI000210A2E1	ArrayExpress:VIT_17s0000g05520	EnsemblPlantsGene:VIT_17s0000g05520	EnsemblPlants:VIT_17s0000g05520.t01	unigene:Vvi.6897
RefSeq:XP_002266733	RefSeq:XP_002266733.1	:	:	:	:

Description

No Description!

Coordinates

chr17:+:6012943..6021623

Molecular Weight (calculated)

49009.7 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.337

Length

431 amino acids

Sequence
(BLAST)

001: MSSLPDHPNI VKLKATYEDS EAVHLVMELC EGGELFDRIV ARGHYSERAA AGVARTIAEV VRMCHENGVI HRDLKPENFL FANKRESSPL KAIDFGLSVF
101: FRPGERFSEI VGSPYYMAPE VLKRNYGPEV DIWSAGVILY ILLCGVPPFW AETEQGVALA ILRGVIDFKR EPWPQISDNA KSLVRQMLEQ DPRKRLTAQQ
201: VLEHSWLQNA KKAPNVPLGD IVRTRLKQFS CMNRFKKKAM RVIAEHLSVE EVEVIRDMFT LMDTDNDGKV TYEELKAGLR KVGSQLGEPE IKLLMEVADV
301: DGNGVLDYGE FVAVTIHLQR MENDEHFQRA FMFFDKDGNG FIDLIELQEA LADESGETDA DVVNEIMREV DTDKDGRINY DEFVAMMKTG TDWRKASRQY
401: SRERFKSLSL NLMKDGSLHL EDRITGQSIA V

Best Arabidopsis Sequence Match ( AT1G74740.1 )
(BLAST)

001: MGNCIACVKF DPDNSKPNQK KKPPRGRQRN PYDDPDGLRT HAPLRVIPMS HQSQISDKYI LGRELGRGEF GITYLCTDRE TREALACKSI SKRKLRTAVD
101: VEDVRREVTI MSTLPEHPNV VKLKATYEDN ENVHLVMELC EGGELFDRIV ARGHYTERAA ATVARTIAEV VRMCHVNGVM HRDLKPENFL FANKKENSAL
201: KAIDFGLSVL FKPGERFTEI VGSPYYMAPE VLKRNYGPEV DVWSAGVILY ILLCGVPPFW AETEQGVALA ILRGVLDFKR DPWSQISESA KSLVKQMLEP
301: DSTKRLTAQQ VLDHPWIQNA KKAPNVPLGD IVRSRLKQFS MMNRLKKKAL RVIAEHLSIQ EVEVIRNMFT LMDDDNDGKI SYLELRAGLR KVGSQLGEPE
401: IKLLMEVADV NGNGCLDYGE FVAVIIHLQK MENDEHFRQA FMFFDKDGSG YIESEELREA LTDELGEPDN SVIIDIMREV DTDKDGKINY DEFVVMMKAG
501: TDWRKASRQY SRERFKSLSL NLMKDGSMHL HDALTGQSIA V

Arabidopsis Description

CPK30Calcium-dependent protein kinase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.