Factsheet for VIT_02s0012g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g00940.t01
VIT_06s0004g00180.t01
VIT_08s0040g01250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	VIT_06s0004g00180.t01	AT1G55520.1	9801140
AT4G17750.1	VIT_08s0040g01250.t01	AT2G41140.1	18466301
AT4G17750.1	VIT_06s0004g00180.t01	AT3G13445.1	9801140
AT4G17750.1	VIT_03s0063g00940.t01	AT3G19100.1	18466301

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07474	Soybean	nucleus	67.14	65.29
KRH74387	Soybean	nucleus	63.91	64.69
KRH39566	Soybean	nucleus	63.71	63.2
PGSC0003DMT400046000	Potato	nucleus	59.68	58.27
Solyc08g005170.2.1	Tomato	nucleus	59.68	56.17
AT1G32330.1	Thale cress	nucleus	54.64	55.88
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	57.66	55.86
GSMUA_Achr4P04500_001	Banana	nucleus	49.19	55.58
CDX78797	Canola	nucleus	46.57	53.72
Bra040179.1-P	Field mustard	nucleus	46.37	53.24
CDY60785	Canola	nucleus	46.57	52.86
Solyc08g076590.2.1	Tomato	nucleus	51.81	52.45
Bra023258.1-P	Field mustard	nucleus	50.4	51.33
PGSC0003DMT400038381	Potato	nucleus	51.41	51.2
Os03t0854500-01	Rice	nucleus	52.22	51.19
CDX93842	Canola	nucleus	50.2	51.13
AT4G17750.1	Thale cress	nucleus	51.01	51.11
GSMUA_Achr3P27600_001	Banana	nucleus	43.75	50.94
CDY01288	Canola	nucleus	50.2	50.61
GSMUA_Achr4P17040_001	Banana	nucleus	49.4	50.31
EER93074	Sorghum	nucleus	52.22	49.15
TraesCS4A01G322300.1	Wheat	nucleus	51.61	49.14
TraesCS5D01G553300.1	Wheat	nucleus	51.61	49.04
Zm00001d034886_P001	Maize	nucleus	51.61	48.58
Bra035507.1-P	Field mustard	nucleus	41.53	48.24
TraesCS5B01G556200.1	Wheat	nucleus	51.41	48.2
CDY44649	Canola	nucleus	43.15	45.05
Zm00001d012823_P001	Maize	nucleus	50.0	44.6
HORVU5Hr1G123770.1	Barley	nucleus	51.61	44.6
VIT_00s0179g00150.t01	Wine grape	nucleus	32.06	44.04
VIT_05s0020g04090.t01	Wine grape	nucleus	29.84	42.05
CDX84097	Canola	nucleus	20.97	38.66
VIT_10s0003g01770.t01	Wine grape	nucleus	26.81	38.33
VIT_04s0008g01110.t01	Wine grape	nucleus	29.23	37.37
VIT_12s0028g01410.t01	Wine grape	nucleus	27.62	37.13
VIT_11s0016g03940.t01	Wine grape	nucleus	20.36	30.7
VIT_08s0007g03900.t01	Wine grape	nucleus	27.82	25.99
VIT_05s0029g00350.t01	Wine grape	mitochondrion, nucleus	18.75	21.14

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100243710	wikigene:100243710	MapMan:15.5.13	MapMan:26.4.2.1	EMBL:AM426260
ProteinID:CAN71266	ProteinID:CAN71266.1	ProteinID:CCB57872	ProteinID:CCB57872.1	ncoils:Coil	UniProt:F6HT62
EMBL:FN596247	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd
InterPro:HSF_fam	InterPro:IPR036388	EntrezGene:LOC100243710	wikigene:LOC100243710	PFAM:PF00447	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	TIGR:TC70552
UniParc:UPI00015C8D12	ArrayExpress:VIT_02s0012g01810	EnsemblPlantsGene:VIT_02s0012g01810	EnsemblPlants:VIT_02s0012g01810.t01	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
RefSeq:XP_003631489	RefSeq:XP_003631489.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:8222967..8235021

Molecular Weight (calculated)

54386.8 Da

IEP (calculated)

4.690

GRAVY (calculated)

-0.579

Length

496 amino acids

Sequence
(BLAST)

001: MEGASGSSSA VNSGGGGGGA PPPHPIPNSN APPPFLSKTY DMVDDPATNS IVSWSPTNNS FVVWNPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP
101: DRWEFANEGF LRGQKHLLRS INRRKPAHGH NLQQPQQSHS QGSSVGACVE VGKFGLEEEV ERLKRDKNVL MQELVRLRQQ QQTTDNQLQT MVQRLQGMEQ
201: RQQQMMSFLA KAVQSPGFLA QFVQQQNESN RRITEANKKR RLKREDTAEG EHSAAPSDGQ IVKYQPLMNE ATKAMLRQMV KMDTSAFSND SDNFLIGDVS
301: SSSNGVEKGG SSTCVSGVTL QEVPPTSLPV ASGVPSHDPP SAPISEIQSP PDICALVGAQ EAVPISIALP DVILPELSQI PEMLPKSIVD IHKDDYVGPQ
401: SGNVEFMDPI SLGIDGAMPI DIDNISADPD IDALLDASSN FWEDLLVDND EVESTPLEDT TKGNEMQPSE NGWDKAQHMA KLTEQMGLLT SDTKRI

Best Arabidopsis Sequence Match ( AT1G32330.2 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SR

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.