Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78797 | Canola | nucleus | 70.3 | 80.93 |
| Bra040179.1-P | Field mustard | nucleus | 70.1 | 80.32 |
| CDY60785 | Canola | nucleus | 70.71 | 80.09 |
| VIT_02s0012g01810.t01 | Wine grape | nucleus | 51.11 | 51.01 |
| KRH74387 | Soybean | nucleus | 48.08 | 48.57 |
| KRH39566 | Soybean | nucleus | 48.69 | 48.2 |
| KRH07474 | Soybean | nucleus | 49.09 | 47.65 |
| GSMUA_Achr4P04500_001 | Banana | nucleus | 42.02 | 47.38 |
| AT1G32330.1 | Thale cress | nucleus | 43.84 | 44.74 |
| PGSC0003DMT400046000 | Potato | nucleus | 45.45 | 44.29 |
| Solyc08g005170.2.1 | Tomato | nucleus | 46.06 | 43.26 |
| Solyc08g076590.2.1 | Tomato | nucleus | 42.22 | 42.65 |
| PGSC0003DMT400038381 | Potato | nucleus | 42.63 | 42.37 |
| GSMUA_Achr3P27600_001 | Banana | nucleus | 36.36 | 42.25 |
| Os03t0854500-01 | Rice | nucleus | 42.83 | 41.9 |
| GSMUA_Achr4P17040_001 | Banana | nucleus | 41.21 | 41.89 |
| TraesCS4A01G322300.1 | Wheat | nucleus | 43.23 | 41.07 |
| AT3G02990.1 | Thale cress | nucleus | 38.79 | 41.03 |
| EER93074 | Sorghum | nucleus | 43.64 | 40.99 |
| AT5G16820.2 | Thale cress | nucleus | 39.8 | 40.96 |
| TraesCS5D01G553300.1 | Wheat | nucleus | 42.83 | 40.61 |
| Zm00001d034886_P001 | Maize | nucleus | 43.23 | 40.61 |
| TraesCS5B01G556200.1 | Wheat | nucleus | 43.03 | 40.26 |
| AT3G51910.1 | Thale cress | nucleus | 22.02 | 40.07 |
| AT5G43840.1 | Thale cress | nucleus | 22.63 | 39.72 |
| AT2G26150.1 | Thale cress | nucleus | 26.67 | 38.26 |
| Zm00001d012823_P001 | Maize | nucleus | 41.41 | 36.87 |
| HORVU5Hr1G123770.1 | Barley | nucleus | 42.63 | 36.76 |
| AT3G63350.1 | Thale cress | nucleus | 20.61 | 36.17 |
| AT3G22830.1 | Thale cress | nucleus | 29.09 | 35.47 |
| AT5G45710.3 | Thale cress | nucleus | 22.63 | 32.46 |
| AT3G24520.1 | Thale cress | nucleus | 20.2 | 30.3 |
| AT5G54070.1 | Thale cress | nucleus | 19.19 | 28.7 |
| AT4G18880.1 | Thale cress | nucleus | 23.03 | 28.43 |
| AT5G03720.1 | Thale cress | nucleus | 22.22 | 26.7 |
| AT4G13980.1 | Thale cress | nucleus | 25.05 | 26.61 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | MapMan:26.4.2.1 | EntrezGene:827496 | ProteinID:AEE83945.1 | EMBL:AK229347 |
| ArrayExpress:AT4G17750 | EnsemblPlantsGene:AT4G17750 | RefSeq:AT4G17750 | TAIR:AT4G17750 | RefSeq:AT4G17750-TAIR-G | EnsemblPlants:AT4G17750.1 |
| TAIR:AT4G17750.1 | Unigene:At.32971 | ProteinID:CAA53761.1 | ProteinID:CAB10555.1 | ProteinID:CAB78778.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009408 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0043565 | Symbol:HSF1 | InterPro:HSF_DNA-bd |
| InterPro:HSF_fam | InterPro:IPR036388 | RefSeq:NP_193510.1 | UniProt:P41151 | PFAM:PF00447 | PO:PO:0000084 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00056 | ScanProsite:PS00434 |
| PANTHER:PTHR10015 | PANTHER:PTHR10015:SF162 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI000012CCE4 | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
HSFA1AHeat stress transcription factor A-1a [Source:UniProtKB/Swiss-Prot;Acc:P41151]
Coordinates
chr4:-:9869818..9871646
Molecular Weight (calculated)
55747.1 Da
IEP (calculated)
4.891
GRAVY (calculated)
-0.712
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVNFKYFSF FIRTKMDGVT GGGTNIGEAV TAPPPRNPHP ATLLNANSLP PPFLSKTYDM VEDPATDAIV SWSPTNNSFI VWDPPEFSRD LLPKYFKHNN
101: FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKKIS RRKSVQGHGS SSSNPQSQQL SQGQGSMAAL SSCVEVGKFG LEEEVEQLKR DKNVLMQELV
201: KLRQQQQTTD NKLQVLVKHL QVMEQRQQQI MSFLAKAVQN PTFLSQFIQK QTDSNMHVTE ANKKRRLRED STAATESNSH SHSLEASDGQ IVKYQPLRND
301: SMMWNMMKTD DKYPFLDGFS SPNQVSGVTL QEVLPITSGQ SQAYASVPSG QPLSYLPSTS TSLPDTIMPE TSQIPQLTRE SINDFPTENF MDTEKNVPEA
401: FISPSPFLDG GSVPIQLEGI PEDPEIDELM SNFEFLEEYM PESPVFGDAT TLENNNNNNN NNNNNNNNNN NNNTNGRHMD KLIEELGLLT SETEH
101: FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKKIS RRKSVQGHGS SSSNPQSQQL SQGQGSMAAL SSCVEVGKFG LEEEVEQLKR DKNVLMQELV
201: KLRQQQQTTD NKLQVLVKHL QVMEQRQQQI MSFLAKAVQN PTFLSQFIQK QTDSNMHVTE ANKKRRLRED STAATESNSH SHSLEASDGQ IVKYQPLRND
301: SMMWNMMKTD DKYPFLDGFS SPNQVSGVTL QEVLPITSGQ SQAYASVPSG QPLSYLPSTS TSLPDTIMPE TSQIPQLTRE SINDFPTENF MDTEKNVPEA
401: FISPSPFLDG GSVPIQLEGI PEDPEIDELM SNFEFLEEYM PESPVFGDAT TLENNNNNNN NNNNNNNNNN NNNTNGRHMD KLIEELGLLT SETEH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.