Factsheet for Bra040179.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000215.1-P
Bra001457.1-P
Bra001734.1-P
Bra004600.1-P
Bra009583.1-P
Bra011920.1-P
Bra016950.1-P
Bra022388.1-P
Bra027434.1-P
Bra030855.1-P
Bra035909.1-P
Bra037539.1-P
Bra038734.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	Bra011920.1-P	AT1G55520.1	9801140
AT4G17750.1	Bra030855.1-P	AT1G55520.1	9801140
AT4G17750.1	Bra000215.1-P	AT2G41140.1	18466301
AT4G17750.1	Bra004600.1-P	AT2G41140.1	18466301
AT4G17750.1	Bra016950.1-P	AT2G41140.1	18466301
AT4G17750.1	Bra001457.1-P	AT3G12580.1	11807141
AT4G17750.1	Bra038734.1-P	AT3G12580.1	11807141
AT4G17750.1	Bra027434.1-P	AT3G13445.1	9801140
AT4G17750.1	Bra001734.1-P	AT3G19100.1	18466301
AT4G17750.1	Bra022388.1-P	AT3G19100.1	18466301
AT4G17750.1	Bra037539.1-P	AT3G19100.1	18466301
AT4G17750.1	Bra009583.1-P	AT5G02500.1	11807141
AT4G17750.1	Bra035909.1-P	AT5G02500.1	11807141

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78797	Canola	nucleus	98.84	99.3
CDY60785	Canola	nucleus	97.92	96.8
AT4G17750.1	Thale cress	nucleus	80.32	70.1
VIT_02s0012g01810.t01	Wine grape	nucleus	53.24	46.37
GSMUA_Achr4P04500_001	Banana	nucleus	46.06	45.33
KRH74387	Soybean	nucleus	51.39	45.31
KRH07474	Soybean	nucleus	53.24	45.1
KRH39566	Soybean	nucleus	51.62	44.6
Bra023258.1-P	Field mustard	nucleus	47.92	42.51
Bra012829.1-P	Field mustard	nucleus	24.07	41.94
PGSC0003DMT400046000	Potato	nucleus	48.84	41.54
GSMUA_Achr3P27600_001	Banana	nucleus	40.74	41.31
Bra021381.1-P	Field mustard	nucleus	43.29	41.19
Solyc08g005170.2.1	Tomato	nucleus	50.0	40.99
Bra023584.1-P	Field mustard	nucleus	41.9	40.95
Bra035993.1-P	Field mustard	nucleus	26.62	40.93
Bra032023.1-P	Field mustard	nucleus	42.82	40.57
Bra012828.1-P	Field mustard	nucleus	25.0	40.15
Solyc08g076590.2.1	Tomato	nucleus	45.37	40.0
PGSC0003DMT400038381	Potato	nucleus	45.83	39.76
Bra001071.1-P	Field mustard	nucleus	41.67	39.74
Os03t0854500-01	Rice	nucleus	46.53	39.72
Bra035507.1-P	Field mustard	nucleus	39.12	39.58
TraesCS4A01G322300.1	Wheat	nucleus	47.69	39.54
TraesCS5D01G553300.1	Wheat	nucleus	47.69	39.46
GSMUA_Achr4P17040_001	Banana	nucleus	44.21	39.22
TraesCS5B01G556200.1	Wheat	nucleus	47.22	38.56
Bra000557.1-P	Field mustard	nucleus	31.02	38.51
EER93074	Sorghum	nucleus	46.3	37.95
Bra008593.1-P	Field mustard	nucleus	42.13	37.68
Zm00001d034886_P001	Maize	nucleus	45.6	37.38
Bra001885.1-P	Field mustard	nucleus	33.33	36.83
Bra023800.1-P	Field mustard	nucleus	33.33	36.18
Bra033913.1-P	Field mustard	nucleus	34.03	36.12
Bra007739.1-P	Field mustard	nucleus	23.61	35.79
HORVU5Hr1G123770.1	Barley	nucleus	47.45	35.71
Zm00001d012823_P001	Maize	nucleus	45.37	35.25
Bra013253.1-P	Field mustard	nucleus	21.53	33.1
Bra017595.1-P	Field mustard	nucleus	25.69	32.65
Bra015050.1-P	Field mustard	nucleus	23.15	32.36
Bra009515.1-P	Field mustard	nucleus	25.93	30.85
Bra020988.1-P	Field mustard	nucleus	24.31	30.09
Bra012571.1-P	Field mustard	nucleus	26.85	29.74
Bra032752.1-P	Field mustard	nucleus	26.85	24.32
Bra013358.1-P	Field mustard	nucleus	25.46	21.28

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	EnsemblPlantsGene:Bra040179	EnsemblPlants:Bra040179.1	EnsemblPlants:Bra040179.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:M4FGF1
PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415
SUPFAM:SSF46785	UniParc:UPI0002545CCC	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

AT4G17750 (E=3e-173) HSF1, HSFA1A, ATHSF1, ATHSFA1A | HSF1 (HEAT SHOCK FACTOR 1); DNA binding / protein binding / transcription factor

Coordinates

chrA01:-:4514252..4515653

Molecular Weight (calculated)

47987.2 Da

IEP (calculated)

4.835

GRAVY (calculated)

-0.619

Length

432 amino acids

Sequence
(BLAST)

001: MMDGVTAGDS KSGDATTAPP LRNPHPATLL GANALPPPFL SKTYDMVEDP ASDAIVSWSP ANNSFVVWDP PEFSRSLLPR YFKHNNFSSF VRQLNTYGFR
101: KVDPDRWEFA NEGFLRGQKH LLKTISRRKS THGHGSSSGS SNTQSHQGHM ASLSSCVEVG KFGLEEEVEQ LKRDKNVLMQ ELVKLRQQQQ STDSKLQTMV
201: KSLQTMEQRQ QQIMSFLAKA VQNPTFLSQF IQKQTDSNNM HVTEASKKRR LTEDGTTAAS DGQIVKYQPI RSDSMMWNMM NTDEKFPFSP NRDSGVTFQE
301: VLLPTTSGQS QAYAPIPSAS TSLMPMIPPM PQESISDSPT ENYMNAEKDV SEAFISPSPF LDGGSVPNQL EGLPQDLDID ELMSNCDIFE EYLAQSPVFG
401: DETTLESSDA NGGHVDKLIE ELGHLTSETK QL

Best Arabidopsis Sequence Match ( AT4G17750.1 )
(BLAST)

001: MFVNFKYFSF FIRTKMDGVT GGGTNIGEAV TAPPPRNPHP ATLLNANSLP PPFLSKTYDM VEDPATDAIV SWSPTNNSFI VWDPPEFSRD LLPKYFKHNN
101: FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKKIS RRKSVQGHGS SSSNPQSQQL SQGQGSMAAL SSCVEVGKFG LEEEVEQLKR DKNVLMQELV
201: KLRQQQQTTD NKLQVLVKHL QVMEQRQQQI MSFLAKAVQN PTFLSQFIQK QTDSNMHVTE ANKKRRLRED STAATESNSH SHSLEASDGQ IVKYQPLRND
301: SMMWNMMKTD DKYPFLDGFS SPNQVSGVTL QEVLPITSGQ SQAYASVPSG QPLSYLPSTS TSLPDTIMPE TSQIPQLTRE SINDFPTENF MDTEKNVPEA
401: FISPSPFLDG GSVPIQLEGI PEDPEIDELM SNFEFLEEYM PESPVFGDAT TLENNNNNNN NNNNNNNNNN NNNTNGRHMD KLIEELGLLT SETEH

Arabidopsis Description

HSFA1AHeat stress transcription factor A-1a [Source:UniProtKB/Swiss-Prot;Acc:P41151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.