Factsheet for Bra023584.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85486	Canola	nucleus	97.51	97.51
CDY38085	Canola	nucleus	89.59	90.2
AT5G16820.2	Thale cress	nucleus	77.83	71.52
Bra008593.1-P	Field mustard	nucleus	71.95	65.84
Bra021381.1-P	Field mustard	nucleus	63.12	61.45
Bra001071.1-P	Field mustard	nucleus	61.99	60.49
Bra032023.1-P	Field mustard	nucleus	62.22	60.31
GSMUA_Achr4P04500_001	Banana	nucleus	47.29	47.61
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	54.98	47.46
KRH77766	Soybean	nucleus	47.96	45.69
PGSC0003DMT400008199	Potato	nucleus	49.09	44.11
KRH27709	Soybean	nucleus	45.7	43.53
Solyc03g097120.2.1	Tomato	nucleus	47.96	43.18
GSMUA_Achr4P17040_001	Banana	nucleus	47.29	42.92
Os03t0854500-01	Rice	nucleus	49.09	42.89
GSMUA_Achr3P27600_001	Banana	nucleus	40.95	42.49
Bra040179.1-P	Field mustard	nucleus	40.95	41.9
PGSC0003DMT400069550	Potato	nucleus	44.57	40.96
Solyc06g072750.2.1	Tomato	nucleus	44.34	40.66
TraesCS5D01G553300.1	Wheat	nucleus	47.96	40.61
Bra012829.1-P	Field mustard	nucleus	22.62	40.32
TraesCS4A01G322300.1	Wheat	nucleus	47.51	40.31
TraesCS5B01G556200.1	Wheat	nucleus	47.96	40.08
EER93074	Sorghum	nucleus	47.74	40.04
Zm00001d034886_P001	Maize	nucleus	46.61	39.09
Bra012828.1-P	Field mustard	nucleus	23.53	38.66
Bra023258.1-P	Field mustard	nucleus	42.31	38.4
Bra035993.1-P	Field mustard	nucleus	23.98	37.72
Zm00001d012823_P001	Maize	nucleus	46.38	36.87
HORVU5Hr1G123770.1	Barley	nucleus	47.51	36.59
Bra000557.1-P	Field mustard	nucleus	28.05	35.63
Bra007739.1-P	Field mustard	nucleus	22.85	35.44
Bra035507.1-P	Field mustard	nucleus	34.16	35.36
Bra017595.1-P	Field mustard	nucleus	26.02	33.82
Bra023800.1-P	Field mustard	nucleus	30.32	33.67
Bra001885.1-P	Field mustard	nucleus	29.64	33.5
Bra033913.1-P	Field mustard	nucleus	30.54	33.17
Bra020988.1-P	Field mustard	nucleus	24.89	31.52
Bra012571.1-P	Field mustard	nucleus	27.38	31.03
Bra009515.1-P	Field mustard	nucleus	25.11	30.58
Bra015050.1-P	Field mustard	nucleus	21.04	30.1
Bra013253.1-P	Field mustard	nucleus	19.0	29.89
Bra032752.1-P	Field mustard	nucleus	26.02	24.11
Bra013358.1-P	Field mustard	nucleus	26.47	22.63

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	EnsemblPlantsGene:Bra023584	EnsemblPlants:Bra023584.1	EnsemblPlants:Bra023584.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd
InterPro:HSF_fam	InterPro:IPR036388	UniProt:M4E481	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002543057	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

AT5G16820 (E=1e-104) HSF3, HSFA1B, ATHSFA1B | HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor

Coordinates

chrA02:+:4067572..4069028

Molecular Weight (calculated)

49112.3 Da

IEP (calculated)

4.519

GRAVY (calculated)

-0.632

Length

442 amino acids

Sequence
(BLAST)

001: MESVQSAPSA NSNSPSIPPP VSSVPPFLSK TYDMVDDPST NEIVSWSSGN NSFVVWNVPE FSKVLLPKHF KHNNFSSFVR QLNTYGFRKV DPDQWEFANE
101: GFLRGQKQLL KGIVRRKPQN QQQTQVQNSS VSACVEVGKF GIEEEVERLK RDKNVLMQEL VGLRQQQQAT EHQLQNVGQK VQVMEQRQQQ TMSFLAKAVQ
201: SPGFLNQLVQ QNSDGNKHIQ GSNKKRRLPG DEEESCGELN RQIVRYQPSI NEAAQTMLRQ VLNRSSSPVS NNPESFLLSD APSSNSPNSA HSAMNQVHEA
301: GLVDHPQAVP SPSQGGVAAA SFWSPESELV GLETGDGVCF DPIMAALGGS LEIESDEVSP LGEGEMTELQ NEVPKLPGVQ DSFWEQFFAD ETAVIGEGDV
401: IISEAVENCE MVMEQEPKEW KQQEMNHLTE QMELLSSEAQ RK

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.