Factsheet for Solyc03g097120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008199	Potato	nucleus	93.48	93.29
Solyc06g072750.2.1	Tomato	nucleus	54.79	55.81
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	56.62	54.3
GSMUA_Achr4P04500_001	Banana	nucleus	46.23	51.71
KRH27709	Soybean	nucleus	47.45	50.22
Solyc06g053960.2.1	Tomato	nucleus	14.46	50.0
KRH77766	Soybean	nucleus	47.25	50.0
Bra023584.1-P	Field mustard	nucleus	43.18	47.96
CDX85486	Canola	nucleus	43.18	47.96
AT5G16820.2	Thale cress	nucleus	46.84	47.82
CDY38085	Canola	nucleus	42.36	47.38
GSMUA_Achr3P27600_001	Banana	nucleus	40.73	46.95
Os03t0854500-01	Rice	nucleus	48.27	46.84
Bra001071.1-P	Field mustard	nucleus	42.77	46.36
Bra032023.1-P	Field mustard	nucleus	42.97	46.27
CDY58547	Canola	nucleus	42.77	46.26
Bra021381.1-P	Field mustard	nucleus	42.77	46.26
CDX92026	Canola	nucleus	42.16	46.21
AT3G02990.1	Thale cress	nucleus	43.99	46.15
GSMUA_Achr4P17040_001	Banana	nucleus	45.62	46.0
TraesCS5D01G553300.1	Wheat	nucleus	48.88	45.98
TraesCS4A01G322300.1	Wheat	nucleus	48.68	45.87
CDX74228	Canola	nucleus	42.36	45.71
TraesCS5B01G556200.1	Wheat	nucleus	48.88	45.37
EER93074	Sorghum	nucleus	48.47	45.16
Zm00001d034886_P001	Maize	nucleus	48.07	44.78
Solyc08g005170.2.1	Tomato	nucleus	47.25	44.02
CDY28731	Canola	nucleus	38.49	43.35
CDY16977	Canola	nucleus	38.49	42.86
Bra008593.1-P	Field mustard	nucleus	41.96	42.65
CDX69418	Canola	nucleus	42.16	42.51
Solyc08g076590.2.1	Tomato	nucleus	42.36	42.45
HORVU5Hr1G123770.1	Barley	nucleus	48.27	41.29
Zm00001d012823_P001	Maize	nucleus	46.23	40.83
Solyc09g082670.2.1	Tomato	nucleus	26.68	36.8
Solyc09g065660.2.1	Tomato	nucleus	27.29	36.02
Solyc07g055710.2.1	Tomato	nucleus	25.46	32.22
Solyc07g040680.2.1	Tomato	nucleus	23.22	32.02
Solyc03g006000.2.1	Tomato	nucleus	25.05	30.67
Solyc02g072000.2.1	Tomato	nucleus	24.85	29.9
Solyc12g098520.1.1	Tomato	nucleus	27.9	28.66
Solyc12g007070.1.1	Tomato	nucleus	20.16	26.83
Solyc09g009100.2.1	Tomato	nucleus	23.83	22.99

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:K4BJC9
PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415
SUPFAM:SSF46785	EnsemblPlantsGene:Solyc03g097120.2	EnsemblPlants:Solyc03g097120.2.1	UniParc:UPI00027681A5	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:59455163..59458326

Molecular Weight (calculated)

54032.7 Da

IEP (calculated)

4.866

GRAVY (calculated)

-0.408

Length

491 amino acids

Sequence
(BLAST)

001: MDGVHEATVA GNLTSPPFLN KTYDMVDDPS TDSVVSWSKS NNSFVVLNVP EFARDILPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGYKHL
101: LKSISRRKPS QLQGHQQTTS KVPNASVASC VEVGKFGIEE EVERLKRDKD VLMQELVKLR QQQQETDHQL VTVGQRVQLM ESRQQQMMSF LAKAMQSPGF
201: VAQLVHQQNG NNRHITGLNK KRRLPEQAEE NVACKPVNAL QDGQVVRYQP SMTEAAKALL QQILRINASG RLDNRLHTNG GCLTNNPLPP NNSLGSSGAS
301: SCISSVTLSE VLSTSSQPNL ISDSGFPFNS CSSIISETQS TTTVVPGEAN IPILPEADAL NSQAVHDLPE FSHTLGVTDV NMPETGNVPD MDTTKCILDD
401: LTTIVSDEFS ANTDGDVLLD GMPKLPAIND IFWDQILSAT PASPLTGDTD EIGSLVVEED LLGVQESDWD KLKHMHNLTE QMGLLSSAAQ I

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.