CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023584.1-P	Field mustard	nucleus	90.2	89.59
CDX85486	Canola	nucleus	89.98	89.37
AT5G16820.2	Thale cress	nucleus	76.99	70.27
CDY43158	Canola	nucleus	46.7	66.99
CDY16977	Canola	nucleus	66.97	66.67
CDX69418	Canola	nucleus	71.3	64.27
CDY58547	Canola	nucleus	61.73	59.69
CDX74228	Canola	nucleus	60.82	58.68
CDX92026	Canola	nucleus	58.54	57.37
CDY28731	Canola	nucleus	56.04	56.42
GSMUA_Achr4P04500_001	Banana	nucleus	48.06	48.06
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	54.67	46.88
KRH77766	Soybean	nucleus	48.75	46.12
CDY43157	Canola	cytosol	9.11	44.44
KRH27709	Soybean	nucleus	46.01	43.53
PGSC0003DMT400008199	Potato	nucleus	48.75	43.5
GSMUA_Achr3P27600_001	Banana	nucleus	41.69	42.96
GSMUA_Achr4P17040_001	Banana	nucleus	47.15	42.51
Os03t0854500-01	Rice	nucleus	48.97	42.49
Solyc03g097120.2.1	Tomato	nucleus	47.38	42.36
CDX78797	Canola	nucleus	40.09	40.93
PGSC0003DMT400069550	Potato	nucleus	44.19	40.33
CDY60785	Canola	nucleus	40.09	40.27
Solyc06g072750.2.1	Tomato	nucleus	43.96	40.04
TraesCS5D01G553300.1	Wheat	nucleus	47.61	40.04
TraesCS4A01G322300.1	Wheat	nucleus	47.15	39.73
TraesCS5B01G556200.1	Wheat	nucleus	47.84	39.7
EER93074	Sorghum	nucleus	47.61	39.66
CDY14893	Canola	nucleus	23.46	39.31
CDX95313	Canola	nucleus	23.92	39.18
Zm00001d034886_P001	Maize	nucleus	46.7	38.9
CDX93842	Canola	nucleus	42.6	38.4
CDX90626	Canola	nucleus	23.46	38.29
CDY29054	Canola	nucleus	23.01	38.11
CDY01288	Canola	nucleus	42.6	38.01
CDY21503	Canola	nucleus	29.39	36.96
Zm00001d012823_P001	Maize	nucleus	46.47	36.69
CDX94887	Canola	nucleus	22.55	36.67
HORVU5Hr1G123770.1	Barley	nucleus	47.38	36.24
CDX76693	Canola	nucleus	23.46	36.14
CDX90627	Canola	nucleus	23.46	35.89
CDY11470	Canola	nucleus	23.23	35.79
CDY34229	Canola	nucleus	30.52	35.36
CDY10674	Canola	nucleus	30.98	34.96
CDY13041	Canola	nucleus	24.15	34.53
CDY46606	Canola	nucleus	29.84	34.2
CDX83217	Canola	nucleus	28.93	34.05
CDY10311	Canola	nucleus	30.07	34.02
CDY46607	Canola	nucleus	28.7	33.96
CDX94884	Canola	nucleus	21.64	33.1
CDY23108	Canola	nucleus	25.51	32.94
CDX92958	Canola	nucleus	25.51	32.56
CDY09259	Canola	nucleus	25.97	31.49
CDY44649	Canola	nucleus	33.71	31.16
CDX70290	Canola	nucleus	25.74	31.13
CDX76506	Canola	nucleus	25.51	30.6
CDX77420	Canola	nucleus	21.64	30.25
CDX93024	Canola	nucleus	20.96	30.07
CDX99415	Canola	nucleus	26.2	29.95
CDY39545	Canola	nucleus	21.41	29.94
CDY01562	Canola	nucleus	26.42	29.52
CDY69818	Canola	nucleus	26.2	29.49
CDY50608	Canola	nucleus	20.96	29.21
CDY10361	Canola	nucleus	26.65	29.18
CDY12723	Canola	nucleus	25.74	23.79
CDY01180	Canola	nucleus	24.37	22.43
CDX78902	Canola	nucleus	26.2	22.24
CDX84097	Canola	nucleus	12.3	20.07

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	GO:A0A078HI23	UniProt:A0A078HI23	EnsemblPlants:CDY38085
ProteinID:CDY38085	ProteinID:CDY38085.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00065352001	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785
UniParc:UPI0004EE8FB6	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaC02g06880DBnaC02g06880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI23]

Coordinates

chrLK032416:-:37422..39000

Molecular Weight (calculated)

48840.8 Da

IEP (calculated)

4.464

GRAVY (calculated)

-0.684

Length

439 amino acids

Sequence
(BLAST)

001: MEPVQSVPSE NSNPPSIPPP VSSVPPFLSK TYDMVDDPST NEVVSWSSGN NSFVVWNVPE FSKVLLPKHF KHNNFSSFVR QLNTYGFRKV DPDQWEFANE
101: GFLRGQKQLL KGIVRRKPQN QQQTQVKNSS AGACVEVGKF GIEEEVERLK HDKNVLMQEL VRLSQQQQAT EHQLQNVGQK VQVMEQRQQQ TMSFLAKAVQ
201: SPGFLNQLVQ QNSDCNKHIQ GSNKKRRLPG DEEESCGELN RQIVKYQPSL NEAAQTMLGQ ILNRSSSTRC ESVSNNPDSF LLDDAHSTNS AHSTMNQVHE
301: AGLVDHPQAV PSPSQGVAAA ASSWSPESEL VGFETGDGVC FDPIMAALGG SLEIESDEVS RVGEGEMTEL QNEVPKLPGV QDSLWEQFFA DEIGEGDDIL
401: SGAVENGDMV MEQEPNEWKQ QEMNHLSEQM ELLSSETRN

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.