CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01180	Canola	nucleus	95.37	94.97
AT4G13980.1	Thale cress	nucleus	85.26	86.91
KRH58845	Soybean	nucleus	57.26	56.78
KRH42748	Soybean	nucleus	56.63	56.39
Solyc12g098520.1.1	Tomato	nucleus	51.79	51.46
PGSC0003DMT400011871	Potato	nucleus	51.58	51.26
GSMUA_Achr9P01640_001	Banana	nucleus	40.63	50.66
GSMUA_Achr6P27750_001	Banana	nucleus	40.0	48.35
VIT_05s0029g00350.t01	Wine grape	mitochondrion, nucleus	43.58	47.05
Os02t0496100-01	Rice	nucleus	44.84	44.84
GSMUA_Achr8P28330_001	Banana	nucleus	30.32	44.04
EES05094	Sorghum	nucleus	44.42	43.51
TraesCS6B01G127000.1	Wheat	nucleus	40.42	42.2
TraesCS6D01G083800.1	Wheat	nucleus	40.42	41.92
TraesCS6A01G098800.1	Wheat	nucleus	40.21	41.7
HORVU6Hr1G017910.1	Barley	nucleus	40.0	41.58
Zm00001d016520_P001	Maize	nucleus	44.21	39.77
CDY13041	Canola	nucleus	25.26	39.09
CDY23108	Canola	nucleus	25.68	35.88
CDY09259	Canola	nucleus	26.95	35.36
CDY29054	Canola	nucleus	19.58	35.09
CDX76506	Canola	nucleus	26.95	34.97
CDX90626	Canola	nucleus	19.79	34.94
CDX95313	Canola	nucleus	19.58	34.7
CDX99415	Canola	nucleus	28.0	34.64
CDY43158	Canola	nucleus	22.11	34.31
CDY14893	Canola	nucleus	18.53	33.59
CDX90627	Canola	nucleus	20.21	33.45
CDY01562	Canola	nucleus	26.74	32.32
CDY69818	Canola	nucleus	26.53	32.31
CDY11470	Canola	nucleus	18.95	31.58
CDX76693	Canola	nucleus	18.74	31.23
CDY21503	Canola	nucleus	21.68	29.51
CDX93024	Canola	nucleus	18.32	28.43
CDY34229	Canola	nucleus	22.53	28.23
CDY28731	Canola	nucleus	25.89	28.21
CDX94887	Canola	nucleus	16.0	28.15
CDY39545	Canola	nucleus	18.53	28.03
CDY50608	Canola	nucleus	18.53	27.94
CDX94884	Canola	nucleus	16.84	27.87
CDX77420	Canola	nucleus	18.32	27.71
CDY46606	Canola	nucleus	22.32	27.68
CDY10674	Canola	nucleus	22.53	27.51
CDX92026	Canola	nucleus	25.89	27.46
CDX78797	Canola	nucleus	24.84	27.44
CDY58547	Canola	nucleus	26.11	27.31
CDY16977	Canola	nucleus	25.05	26.98
CDY46607	Canola	nucleus	21.05	26.95
CDX83217	Canola	nucleus	21.05	26.81
CDY60785	Canola	nucleus	24.63	26.77
CDY10311	Canola	nucleus	21.68	26.55
CDX74228	Canola	nucleus	25.26	26.37
CDX85486	Canola	nucleus	24.42	26.24
CDX92958	Canola	nucleus	18.74	25.87
CDY38085	Canola	nucleus	23.79	25.74
CDX78902	Canola	nucleus	27.58	25.34
CDX69418	Canola	nucleus	25.05	24.44
CDX93842	Canola	nucleus	24.63	24.02
CDY01288	Canola	nucleus	24.21	23.37
CDX70290	Canola	nucleus	17.26	22.59
CDY10361	Canola	nucleus	17.47	20.7
CDY44649	Canola	nucleus	19.58	19.58
CDY43157	Canola	cytosol	3.58	18.89
CDX84097	Canola	nucleus	4.42	7.81

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	GO:A0A078FKN0	UniProt:A0A078FKN0	EnsemblPlants:CDY12723	ProteinID:CDY12723
ProteinID:CDY12723.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00070282001	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF157	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0004EEC9A4
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaC04g29180DBnaC04g29180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKN0]

Coordinates

chrLK032026:-:346730..348840

Molecular Weight (calculated)

52722.2 Da

IEP (calculated)

5.751

GRAVY (calculated)

-0.775

Length

475 amino acids

Sequence
(BLAST)

001: MNGALGNSSA SVTGGGGGDG AGGPAPFLVK TYEMVDDSST DEIVSWSSNN NSFIVWNHAE FSCVLLPTYF KHNNFSSFIR QLNTYGFRKI DPERWEFSND
101: DFIKDQKHLL KNIHRRKPIH SHSQPPVSSV DQERAALQEQ MDKLSREKAA IEAKLLKFEQ HKSTAKHNLD EMAEHVEDME KRQEKLMSFL ETAMRNPTFI
201: KNFGRKVEDL DVSAYNKKRR LPQGEQSKPP SEDSHLDNSS GSSRPESGNI FHQNFSNKLR LELSPAVSDM NMVSHSIQSS NEGGASPKGI LSGSDPNTIQ
301: TRREGLPFAP EALELADTGS CPGILLLNDK TIPEPLQQMI TSSEETDGSF SCHLNLTLAS APLPDKTASQ IAKTTHKSQE IGRVTELNFN SIETSASEKN
401: RGQQEVAAGG KLTNAAPPAR VNDVFWEQFL TERPGSSDNE EASSTYRENP CEEQEEKRNG HVISRCTKNI EQLTL

Best Arabidopsis Sequence Match ( AT4G13980.1 )
(BLAST)

001: MNGALGNSSA SVSGGEGAGG PAPFLVKTYE MVDDSSTDQI VSWSANNNSF IVWNHAEFSR LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFLNDDFI
101: KDQKHLLKNI HRRKPIHSHS HPPASSTDQE RAVLQEQMDK LSREKAAIEA KLLKFKQQKV VAKHQFEEMT EHVDDMENRQ KKLLNFLETA IRNPTFVKNF
201: GKKVEQLDIS AYNKKRRLPE VEQSKPPSED SHLDNSSGSS RRESGNIFHQ NFSNKLRLEL SPADSDMNMV SHSIQSSNEE GASPKGILSG GDPNTTLTKR
301: EGLPFAPEAL ELADTGTCPR RLLLNDNTRV ETLQQRLTSS EETDGSFSCH LNLTLASAPL PDKTASQIAK TTLKSQELNF NSIETSASEK NRGRQEIAVG
401: GSQANAAPPA RVNDVFWEQF LTERPGSSDN EEASSTYRGN PYEEQEEKRN GSMMLRNTKN IEQLTL

Arabidopsis Description

HSFA5Heat stress transcription factor A-5 [Source:UniProtKB/Swiss-Prot;Acc:Q94BZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.