Factsheet for PGSC0003DMT400011871

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098520.1.1	Tomato	nucleus	97.49	97.49
KRH42748	Soybean	nucleus	64.44	64.57
KRH58845	Soybean	nucleus	64.64	64.51
VIT_05s0029g00350.t01	Wine grape	mitochondrion, nucleus	53.77	58.41
AT4G13980.1	Thale cress	nucleus	52.51	53.86
GSMUA_Achr9P01640_001	Banana	nucleus	41.21	51.71
CDY12723	Canola	nucleus	51.26	51.58
CDY01180	Canola	nucleus	50.84	50.94
Bra032752.1-P	Field mustard	nucleus	50.84	50.94
GSMUA_Achr6P27750_001	Banana	nucleus	40.59	49.36
Os02t0496100-01	Rice	nucleus	48.54	48.84
EES05094	Sorghum	nucleus	47.7	47.01
TraesCS6A01G098800.1	Wheat	nucleus	44.77	46.72
TraesCS6D01G083800.1	Wheat	nucleus	44.56	46.51
GSMUA_Achr8P28330_001	Banana	nucleus	31.8	46.48
HORVU6Hr1G017910.1	Barley	nucleus	44.35	46.39
TraesCS6B01G127000.1	Wheat	nucleus	44.14	46.37
Zm00001d016520_P001	Maize	nucleus	46.65	42.23
PGSC0003DMT400044683	Potato	nucleus	29.5	34.22
PGSC0003DMT400071487	Potato	nucleus	28.03	33.25
PGSC0003DMT400049793	Potato	nucleus	24.9	32.69
PGSC0003DMT400049795	Potato	nucleus	24.06	31.94
PGSC0003DMT400041944	Potato	nucleus	22.38	31.1
PGSC0003DMT400082752	Potato	nucleus	21.97	29.09
PGSC0003DMT400016511	Potato	nucleus	21.97	29.01
PGSC0003DMT400021234	Potato	nucleus	21.34	28.9
PGSC0003DMT400046000	Potato	nucleus	29.92	28.15
PGSC0003DMT400008199	Potato	nucleus	28.87	28.05
PGSC0003DMT400069550	Potato	nucleus	27.82	27.65
PGSC0003DMT400038381	Potato	nucleus	26.78	25.7
PGSC0003DMT400001025	Potato	nucleus	19.46	25.27
PGSC0003DMT400006917	Potato	nucleus	22.18	21.33

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102581536	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:M1A0B9
PFAM:PF00447	EnsemblPlantsGene:PGSC0003DMG400004662	PGSC:PGSC0003DMG400004662	EnsemblPlants:PGSC0003DMT400011871	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF157	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI00029596FE	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_006349912.1	SEG:seg	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004662]

Coordinates

chr12:-:59294378..59298391

Molecular Weight (calculated)

53428.0 Da

IEP (calculated)

5.490

GRAVY (calculated)

-0.699

Length

478 amino acids

Sequence
(BLAST)

001: MDVISAAVAA GGGGGPAPFL LKTYEMVDDS QTDDIVSWTP TGHSFVVWNP PEFARILLPT YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFLKDQKH
101: LLKNIHRRKP IHSHSHPPGS TVDPERAAFE EEIDKLTREK SGLEANVSRF RQQQSAAKLQ LEELTGRVGS IEQRQESLLA FVEKAIQNPD FVERLAQKLE
201: SMDISAFSKK RRLPQIDSTQ PVQESMSVDN HSSSRVEFGN LSHQDFSNKL RLELSPAVSD INVLSCSTQS SNDDGGSPAH RRISEGWSRE VQLRTVGVIY
301: TPEAIELSDT GTSFTLKMDS SLPRASSNVE SSRLHPLPQS LTSNEEVDGH ISCQLNLSLA SCLSQVDKNQ YSVRMPQIGQ EIGKRFESQS DANDKIPPTD
401: DKSLPPSHDA TANKQVPAAA PVRVNDVFWE QFLTERPGCS DNEEASSSYK GNSYDEQDER KSNQGVASNT RKVEHLTL

Best Arabidopsis Sequence Match ( AT4G13980.1 )
(BLAST)

001: MNGALGNSSA SVSGGEGAGG PAPFLVKTYE MVDDSSTDQI VSWSANNNSF IVWNHAEFSR LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFLNDDFI
101: KDQKHLLKNI HRRKPIHSHS HPPASSTDQE RAVLQEQMDK LSREKAAIEA KLLKFKQQKV VAKHQFEEMT EHVDDMENRQ KKLLNFLETA IRNPTFVKNF
201: GKKVEQLDIS AYNKKRRLPE VEQSKPPSED SHLDNSSGSS RRESGNIFHQ NFSNKLRLEL SPADSDMNMV SHSIQSSNEE GASPKGILSG GDPNTTLTKR
301: EGLPFAPEAL ELADTGTCPR RLLLNDNTRV ETLQQRLTSS EETDGSFSCH LNLTLASAPL PDKTASQIAK TTLKSQELNF NSIETSASEK NRGRQEIAVG
401: GSQANAAPPA RVNDVFWEQF LTERPGSSDN EEASSTYRGN PYEEQEEKRN GSMMLRNTKN IEQLTL

Arabidopsis Description

HSFA5Heat stress transcription factor A-5 [Source:UniProtKB/Swiss-Prot;Acc:Q94BZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.