CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42748	Soybean	nucleus	95.82	96.23
Solyc12g098520.1.1	Tomato	nucleus	64.72	64.85
PGSC0003DMT400011871	Potato	nucleus	64.51	64.64
AT4G13980.1	Thale cress	nucleus	56.16	57.73
VIT_05s0029g00350.t01	Wine grape	mitochondrion, nucleus	52.82	57.5
CDY12723	Canola	nucleus	56.78	57.26
Bra032752.1-P	Field mustard	nucleus	56.99	57.23
CDY01180	Canola	nucleus	56.58	56.81
GSMUA_Achr9P01640_001	Banana	nucleus	42.17	53.02
GSMUA_Achr6P27750_001	Banana	nucleus	42.8	52.16
GSMUA_Achr8P28330_001	Banana	nucleus	32.57	47.71
Os02t0496100-01	Rice	nucleus	45.72	46.11
TraesCS6B01G127000.1	Wheat	nucleus	42.8	45.05
TraesCS6D01G083800.1	Wheat	nucleus	43.01	44.98
TraesCS6A01G098800.1	Wheat	nucleus	42.59	44.54
EES05094	Sorghum	nucleus	45.09	44.54
HORVU6Hr1G017910.1	Barley	nucleus	41.75	43.76
Zm00001d016520_P001	Maize	nucleus	44.05	39.96
KRH11063	Soybean	nucleus	30.9	37.76
KRH21206	Soybean	nucleus	30.9	37.76
KRH42919	Soybean	nucleus	30.27	36.07
KRH59030	Soybean	nucleus	29.85	35.57
KRH32059	Soybean	nucleus	24.22	34.02
KRG91367	Soybean	nucleus	24.84	32.51
KRH31657	Soybean	nucleus	22.76	32.34
KRH35452	Soybean	nucleus	23.8	31.15
KRG95588	Soybean	nucleus	23.8	30.81
KRH67266	Soybean	nucleus	24.22	30.05
KRH61515	Soybean	nucleus	23.17	29.84
KRH05436	Soybean	nucleus	21.71	29.3
KRH15573	Soybean	nucleus	22.13	29.12
KRH39283	Soybean	nucleus	19.21	28.75
KRH07474	Soybean	nucleus	29.65	27.84
KRH74387	Soybean	nucleus	27.77	27.14
KRH77766	Soybean	nucleus	26.1	26.94
KRH27709	Soybean	nucleus	26.1	26.94
KRH39566	Soybean	nucleus	27.35	26.2
KRH02689	Soybean	nucleus	21.5	25.5
KRH67848	Soybean	nucleus	22.13	25.06
KRH19208	Soybean	nucleus	21.09	24.75
KRH20029	Soybean	nucleus	22.96	24.23
KRH32651	Soybean	nucleus	22.76	23.7

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100816484	MapMan:15.5.13	EMBL:ACUP02003292	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G151800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam
UniProt:I1K3S2	InterPro:IPR036388	EnsemblPlants:KRH58845	ProteinID:KRH58845	ProteinID:KRH58845.1	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF157	SMART:SM00415	SUPFAM:SSF46785
UniParc:UPI0001ED0551	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:34535641..34540714

Molecular Weight (calculated)

54031.7 Da

IEP (calculated)

5.376

GRAVY (calculated)

-0.743

Length

479 amino acids

Sequence
(BLAST)

001: MDGAPQSAGA GGPAPFLLKT YDMVDDASTN DIVSWSSTNN SFVVWNPPEF ARLLLPTYFK HNNFSSFIRQ LNTYGFRKIH PERWEFANDE FLKDQKHLLK
101: NIYRRKPIHS HSHPPGSLVD PERAAFEEEI DKLSREKTSL ESNIYNFKQH QSTAKPKLED FLQRLDGIEQ RQKQLLNFFE KALQNPTFVE HLSRKIESMD
201: LSAYKKRRLP QVDHVQPVAE SSLVDSHSNF RMEFGNVFHQ DFSNKLRLEL SPAVSDMNLV SRSTQSSNED GESPQKKLSE VEPKGVQTRT ALTFAPETLE
301: LADTGASFTF KMDSCLSRKT TTAESSKLIS LEPSSEEGDS LSCQLNLTLA SCPLQVNRNS YSARSPQIDC QEIGKLAESR FFANGKESDS GVSSNLNVAA
401: EATNLALSQE DPSNNQVNPA PPDRVNDVFW EQFLTERPGC SDNEEAMSNY RANPHDEQDE GRSAHGISRN IKNMDQLTL

Best Arabidopsis Sequence Match ( AT4G13980.1 )
(BLAST)

001: MNGALGNSSA SVSGGEGAGG PAPFLVKTYE MVDDSSTDQI VSWSANNNSF IVWNHAEFSR LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFLNDDFI
101: KDQKHLLKNI HRRKPIHSHS HPPASSTDQE RAVLQEQMDK LSREKAAIEA KLLKFKQQKV VAKHQFEEMT EHVDDMENRQ KKLLNFLETA IRNPTFVKNF
201: GKKVEQLDIS AYNKKRRLPE VEQSKPPSED SHLDNSSGSS RRESGNIFHQ NFSNKLRLEL SPADSDMNMV SHSIQSSNEE GASPKGILSG GDPNTTLTKR
301: EGLPFAPEAL ELADTGTCPR RLLLNDNTRV ETLQQRLTSS EETDGSFSCH LNLTLASAPL PDKTASQIAK TTLKSQELNF NSIETSASEK NRGRQEIAVG
401: GSQANAAPPA RVNDVFWEQF LTERPGSSDN EEASSTYRGN PYEEQEEKRN GSMMLRNTKN IEQLTL

Arabidopsis Description

HSFA5Heat stress transcription factor A-5 [Source:UniProtKB/Swiss-Prot;Acc:Q94BZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.