Factsheet for PGSC0003DMT400044683

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g055710.2.1	Tomato	nucleus	83.01	88.14
VIT_12s0028g01410.t01	Wine grape	nucleus	44.42	49.59
GSMUA_Achr8P27750_001	Banana	nucleus	25.97	48.42
PGSC0003DMT400071487	Potato	nucleus	40.29	41.19
HORVU3Hr1G071550.3	Barley	nucleus	41.5	39.58
Zm00001d012749_P001	Maize	nucleus	41.26	39.26
EES01479	Sorghum	nucleus	41.02	38.94
TraesCS3A01G289200.1	Wheat	nucleus	40.29	38.43
Os01t0749300-02	Rice	nucleus	41.02	38.41
TraesCS3B01G323800.1	Wheat	nucleus	40.05	37.41
GSMUA_Achr3P15640_001	Banana	nucleus	40.29	36.64
TraesCS3D01G289000.1	Wheat	nucleus	36.65	36.3
HORVU1Hr1G081300.1	Barley	nucleus	37.14	35.5
Zm00001d010812_P001	Maize	nucleus	38.35	35.19
GSMUA_Achr6P31750_001	Banana	nucleus	41.02	34.77
Os05t0530400-01	Rice	nucleus	37.62	33.77
TraesCS1A01G350400.2	Wheat	nucleus	35.92	33.41
EES18551	Sorghum	nucleus	38.11	32.98
Zm00001d038746_P001	Maize	nucleus	35.68	31.34
PGSC0003DMT400016511	Potato	nucleus	26.7	30.39
PGSC0003DMT400041944	Potato	nucleus	24.76	29.65
PGSC0003DMT400011871	Potato	nucleus	34.22	29.5
PGSC0003DMT400049793	Potato	nucleus	25.0	28.3
PGSC0003DMT400049795	Potato	nucleus	23.79	27.22
PGSC0003DMT400021234	Potato	nucleus	22.82	26.63
PGSC0003DMT400082752	Potato	nucleus	22.82	26.04
PGSC0003DMT400008199	Potato	nucleus	30.83	25.81
PGSC0003DMT400046000	Potato	nucleus	31.31	25.39
PGSC0003DMT400069550	Potato	nucleus	29.37	25.16
PGSC0003DMT400038381	Potato	nucleus	30.34	25.1
PGSC0003DMT400001025	Potato	nucleus	18.93	21.2
PGSC0003DMT400006917	Potato	nucleus	23.54	19.52

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:M1BGI1	PFAM:PF00447
EnsemblPlantsGene:PGSC0003DMG400017334	PGSC:PGSC0003DMG400017334	EnsemblPlants:PGSC0003DMT400044683	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015
PANTHER:PTHR10015:SF154	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002953A7C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

Heat shock factor protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017334]

Coordinates

chr7:-:50788930..50790662

Molecular Weight (calculated)

47020.6 Da

IEP (calculated)

5.222

GRAVY (calculated)

-0.784

Length

412 amino acids

Sequence
(BLAST)

001: MDNCNERSSS SSPAPFLLKT YELVDDTYTN PVVSWNHNGR SFVVWNPPEF ARDLLPKYFK HNNFSSFIRQ LNTYGFRKVD PEQWEFANEE FLRGQRHLLK
101: NIYRRKPIHS HSATGQSVAA LTDSERQEYE DEIERLKREN SMLQSSAENQ EKFNMEYESG IKSMEQRLQN VAHRQGKLIS LLAQLLQRPG FSSDFIQCAN
201: NNSKKRRLLV SNYLTEEENA ATNSVVAPKL DMEMVKKLDS SINFWERFLY GTRMNPTEDQ TCDFDHTQPL PSPIVIREMD TSSDDSGKRN SPIDHSPSSS
301: ELGGGPLSPV ISSIYVNLEC QLKPSDQVNQ VEGKTTKTSE LVSNSGNDVF WQQFLTETPG CTEPQEVENK GINELACDIR LGDNHRYWWN SGVNVENLAE
401: RMGHLSSPAT GS

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.