Factsheet for PGSC0003DMT400069550

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072750.2.1	Tomato	nucleus	94.18	93.98
PGSC0003DMT400008199	Potato	nucleus	57.38	56.1
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	52.18	49.02
GSMUA_Achr4P04500_001	Banana	nucleus	41.58	45.56
CDX85486	Canola	nucleus	41.16	44.8
Bra023584.1-P	Field mustard	nucleus	40.96	44.57
CDY38085	Canola	nucleus	40.33	44.19
KRH77766	Soybean	nucleus	42.62	44.18
KRH27709	Soybean	nucleus	42.0	43.53
AT5G16820.2	Thale cress	nucleus	43.45	43.45
GSMUA_Achr3P27600_001	Banana	nucleus	37.84	42.72
CDX92026	Canola	nucleus	39.09	41.96
Os03t0854500-01	Rice	nucleus	43.66	41.5
Bra032023.1-P	Field mustard	nucleus	39.29	41.45
PGSC0003DMT400046000	Potato	nucleus	43.45	41.14
Bra001071.1-P	Field mustard	nucleus	38.67	41.06
TraesCS5D01G553300.1	Wheat	nucleus	44.49	41.0
Bra021381.1-P	Field mustard	nucleus	38.67	40.97
GSMUA_Achr4P17040_001	Banana	nucleus	41.37	40.86
EER93074	Sorghum	nucleus	44.7	40.8
CDY58547	Canola	nucleus	38.46	40.75
TraesCS4A01G322300.1	Wheat	nucleus	44.07	40.69
CDX74228	Canola	nucleus	38.46	40.66
AT3G02990.1	Thale cress	nucleus	39.5	40.6
TraesCS5B01G556200.1	Wheat	nucleus	44.49	40.45
CDY16977	Canola	nucleus	36.8	40.14
Zm00001d034886_P001	Maize	nucleus	43.87	40.04
Bra008593.1-P	Field mustard	nucleus	39.5	39.34
CDX69418	Canola	nucleus	39.29	38.81
CDY28731	Canola	nucleus	35.14	38.76
HORVU5Hr1G123770.1	Barley	nucleus	44.07	36.93
PGSC0003DMT400038381	Potato	nucleus	38.05	36.75
PGSC0003DMT400041944	Potato	nucleus	26.2	36.63
PGSC0003DMT400021234	Potato	nucleus	26.4	35.98
Zm00001d012823_P001	Maize	nucleus	41.16	35.61
PGSC0003DMT400016511	Potato	nucleus	25.99	34.53
PGSC0003DMT400049793	Potato	nucleus	25.78	34.07
PGSC0003DMT400049795	Potato	nucleus	25.36	33.89
PGSC0003DMT400071487	Potato	nucleus	25.36	30.27
PGSC0003DMT400044683	Potato	nucleus	25.16	29.37
PGSC0003DMT400082752	Potato	nucleus	21.41	28.53
PGSC0003DMT400011871	Potato	nucleus	27.65	27.82
PGSC0003DMT400001025	Potato	nucleus	20.79	27.17
PGSC0003DMT400006917	Potato	nucleus	25.99	25.15

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:M1CKN3
PFAM:PF00447	EnsemblPlantsGene:PGSC0003DMG400027036	PGSC:PGSC0003DMG400027036	EnsemblPlants:PGSC0003DMT400069550	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI00029579A1	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

Heat shock factor protein HSF8 [Source:PGSC_GENE;Acc:PGSC0003DMG400027036]

Coordinates

chr6:+:53458661..53463194

Molecular Weight (calculated)

54425.3 Da

IEP (calculated)

4.961

GRAVY (calculated)

-0.578

Length

481 amino acids

Sequence
(BLAST)

001: MEGVHEIGNS LPPFLSKTYD MVDDRSTDTV VSWSKSNNSF VVWNVPEFSR DILPKYFKHN NFSSFVRQLN TYGYKKVDPD CWEFANEGFL RGQKHLLKTI
101: SRRKPSQMQV HQETASQVQS LSVGSCVEVG KIGIEEEVER LKIDKSIHME ELVNLRQQQK ATDHRLENVG QRLQLMEQRE QQAMTFLAKA LQSPGFIAEL
201: VHQQNEGKRR IPGMNKKRRF PNQEEENYAA KQVSTLRDRQ IVRYQPLMNE AAKALLQKLL KTNTSGRLET IVKNTHGFLT NRARSFENTL ETGGISPHIS
301: EVTLSQLATS SQSHLMSDSG FPFNSSLSVI PEIQYSPSLV PGQAKVPQFP ELNALNSQTD HVNPEFSGHG FNTPETLEIT DLKQPETGDM PYIETMQDIV
401: DDVASIVPDG FSMDDVFLDE MPKLPGINDI FWDQILLASP LTGDKDEIGS LALEDGLAKE EDVPEVQESD CEELKRMSHL T

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.