Factsheet for PGSC0003DMT400038381

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400021598
PGSC0003DMT400066365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	PGSC0003DMT400021598	AT2G41140.1	18466301
AT4G17750.1	PGSC0003DMT400066365	AT3G19100.1	18466301

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076590.2.1	Tomato	nucleus	89.56	91.02
PGSC0003DMT400046000	Potato	nucleus	56.43	55.31
VIT_02s0012g01810.t01	Wine grape	nucleus	51.2	51.41
KRH39566	Soybean	nucleus	49.6	49.4
KRH74387	Soybean	nucleus	48.59	49.39
KRH07474	Soybean	nucleus	50.4	49.22
GSMUA_Achr4P04500_001	Banana	nucleus	43.37	49.2
CDX78797	Canola	nucleus	39.96	46.28
GSMUA_Achr3P27600_001	Banana	nucleus	39.56	46.24
Bra040179.1-P	Field mustard	nucleus	39.76	45.83
Os03t0854500-01	Rice	nucleus	46.39	45.65
CDY60785	Canola	nucleus	39.56	45.08
AT1G32330.1	Thale cress	nucleus	43.78	44.95
TraesCS5D01G553300.1	Wheat	nucleus	46.99	44.83
TraesCS4A01G322300.1	Wheat	nucleus	46.79	44.72
TraesCS5B01G556200.1	Wheat	nucleus	46.99	44.23
EER93074	Sorghum	nucleus	46.39	43.83
GSMUA_Achr4P17040_001	Banana	nucleus	41.97	42.92
PGSC0003DMT400008199	Potato	nucleus	42.37	42.89
Zm00001d034886_P001	Maize	nucleus	45.18	42.69
AT4G17750.1	Thale cress	nucleus	42.37	42.63
Bra023258.1-P	Field mustard	nucleus	41.37	42.3
CDX93842	Canola	nucleus	41.16	42.09
CDY01288	Canola	nucleus	40.96	41.46
HORVU5Hr1G123770.1	Barley	nucleus	46.59	40.42
Zm00001d012823_P001	Maize	nucleus	44.18	39.57
PGSC0003DMT400041944	Potato	nucleus	26.71	38.66
Bra035507.1-P	Field mustard	nucleus	32.93	38.41
PGSC0003DMT400069550	Potato	nucleus	36.75	38.05
PGSC0003DMT400021234	Potato	nucleus	26.31	37.11
PGSC0003DMT400016511	Potato	nucleus	26.51	36.46
PGSC0003DMT400049793	Potato	nucleus	26.1	35.71
PGSC0003DMT400049795	Potato	nucleus	25.3	35.0
CDY44649	Canola	nucleus	33.13	34.74
PGSC0003DMT400082752	Potato	nucleus	22.09	30.47
PGSC0003DMT400044683	Potato	nucleus	25.1	30.34
PGSC0003DMT400071487	Potato	nucleus	24.5	30.27
CDX84097	Canola	nucleus	15.06	27.88
PGSC0003DMT400011871	Potato	nucleus	25.7	26.78
PGSC0003DMT400006917	Potato	nucleus	24.3	24.35
PGSC0003DMT400001025	Potato	nucleus	17.67	23.91

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102579124	MapMan:15.5.13	MapMan:26.4.2.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:M1B6S4
PFAM:PF00447	EnsemblPlantsGene:PGSC0003DMG400014811	PGSC:PGSC0003DMG400014811	EnsemblPlants:PGSC0003DMT400038381	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002960120	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_006352886.1	RefSeq:XP_006352887.1	RefSeq:XP_006352888.1	SEG:seg	:

Description

Heat shock factor protein HSF8 [Source:PGSC_GENE;Acc:PGSC0003DMG400014811]

Coordinates

chr8:-:49189274..49194971

Molecular Weight (calculated)

55724.4 Da

IEP (calculated)

4.778

GRAVY (calculated)

-0.671

Length

498 amino acids

Sequence
(BLAST)

001: MGSTSMDAGG SSPVPEPTPA PMASTNTLPP FLMKTYDMVD DPSTDKIVSW SPTDSSFVIW DPPELAKELL PKYFKHSNFS SFVRQLNTYG FRKVGSDNWK
101: FSNDGFIRGQ KHLLKNISRR KPAHGQSQQQ QQQQQLHGQS ASVGACVEVG NFGIEKEVEW LKRDKNVLMQ ELVKLRQHQQ TTDNQMQTMV QNLQIMEQRQ
201: QQMMSFLAKA VNSPGFLAQF VQQQNDNNKR KMEGNKKRRI RQDIPSDDHS VSPADGQLVK YQPIMNEAVK GMLRQIPELD SSPRLENFSN SPESSPTGDA
301: FDGRSNNRIS GVTLQEVSHA FSQPFASATS AIAGQSSLSA NIQFSESSSL VGAQDLPPIL PFSSDMIMPV PSQLQEIVPE NNMDINGTER GHDSFMDPTL
401: WGNGKLPLEN DIFPPDLQIK WESALIDDIG EPPSVGDPSW EKFLQSLYPT ESEEMGSVEI ENINTTETES LENGWYNVQH MEHLTEQMGL LTSNTKKV

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.