Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10674 | Canola | nucleus | 96.13 | 95.89 |
| Bra033913.1-P | Field mustard | nucleus | 96.39 | 91.89 |
| CDX94887 | Canola | nucleus | 58.76 | 84.44 |
| CDY34229 | Canola | nucleus | 79.64 | 81.53 |
| CDY46606 | Canola | nucleus | 77.58 | 78.59 |
| AT3G22830.1 | Thale cress | nucleus | 81.7 | 78.08 |
| CDX94884 | Canola | nucleus | 57.47 | 77.7 |
| CDX92958 | Canola | nucleus | 68.3 | 77.03 |
| CDY46607 | Canola | nucleus | 71.91 | 75.2 |
| Solyc06g053960.2.1 | Tomato | nucleus | 24.48 | 66.9 |
| KRG91367 | Soybean | nucleus | 51.55 | 54.64 |
| Solyc09g082670.2.1 | Tomato | nucleus | 50.0 | 54.49 |
| PGSC0003DMT400016511 | Potato | nucleus | 50.0 | 53.59 |
| KRH31657 | Soybean | nucleus | 46.13 | 53.12 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 39.69 | 53.1 |
| PGSC0003DMT400041944 | Potato | nucleus | 46.13 | 52.03 |
| KRH35452 | Soybean | nucleus | 48.71 | 51.64 |
| CDX95313 | Canola | nucleus | 35.05 | 50.75 |
| CDX90626 | Canola | nucleus | 34.28 | 49.44 |
| Os10t0419300-00 | Rice | nucleus | 45.1 | 48.88 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 42.01 | 48.8 |
| CDY29054 | Canola | nucleus | 33.25 | 48.68 |
| Zm00001d032923_P002 | Maize | nucleus | 44.07 | 47.9 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 37.37 | 47.08 |
| CDX90627 | Canola | nucleus | 34.79 | 47.04 |
| EER94213 | Sorghum | nucleus | 43.3 | 46.41 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 42.01 | 46.31 |
| TraesCS4D01G276500.1 | Wheat | nucleus | 40.46 | 46.04 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 39.18 | 45.65 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 39.95 | 45.45 |
| EER93298 | Sorghum | nucleus | 39.69 | 45.43 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 43.04 | 44.89 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 39.43 | 44.87 |
| EER95940 | Sorghum | nucleus | 42.78 | 44.62 |
| Zm00001d018941_P001 | Maize | nucleus | 42.78 | 44.27 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 39.18 | 44.19 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 41.75 | 44.02 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 40.46 | 43.85 |
| Os07t0178600-01 | Rice | nucleus | 42.01 | 43.82 |
| Os03t0161900-02 | Rice | nucleus | 42.78 | 43.8 |
| TraesCS1D01G382900.1 | Wheat | nucleus | 40.72 | 43.41 |
| CDY14893 | Canola | nucleus | 29.12 | 43.13 |
| TraesCS5D01G445100.1 | Wheat | nucleus | 38.14 | 42.53 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 37.89 | 42.49 |
| CDY11470 | Canola | nucleus | 30.93 | 42.11 |
| EER95463 | Sorghum | nucleus | 42.01 | 41.69 |
| Zm00001d027757_P001 | Maize | nucleus | 41.24 | 41.67 |
| CDX76693 | Canola | nucleus | 30.41 | 41.4 |
| TraesCS5B01G440700.1 | Wheat | nucleus | 37.63 | 41.36 |
| TraesCS2B01G105100.1 | Wheat | nucleus | 42.01 | 40.25 |
| HORVU5Hr1G094380.1 | Barley | nucleus | 38.4 | 40.16 |
| CDY21503 | Canola | nucleus | 36.08 | 40.11 |
| TraesCS2D01G087400.1 | Wheat | nucleus | 42.53 | 40.05 |
| HORVU2Hr1G014590.1 | Barley | nucleus | 42.78 | 39.71 |
| TraesCS2A01G089300.1 | Wheat | nucleus | 42.27 | 39.71 |
| TraesCS5D01G393200.1 | Wheat | nucleus | 37.63 | 38.73 |
| TraesCS5A01G383800.1 | Wheat | nucleus | 37.11 | 38.71 |
| EER90889 | Sorghum | nucleus | 36.86 | 38.54 |
| CDX83217 | Canola | nucleus | 36.6 | 38.07 |
| Zm00001d033987_P001 | Maize | nucleus | 36.34 | 38.01 |
| CDY43158 | Canola | nucleus | 29.9 | 37.91 |
| TraesCS3A01G405200.1 | Wheat | nucleus | 38.66 | 37.78 |
| TraesCS3B01G438900.1 | Wheat | nucleus | 38.14 | 34.18 |
| CDX78797 | Canola | nucleus | 36.86 | 33.26 |
| CDY60785 | Canola | nucleus | 37.11 | 32.95 |
| CDX93024 | Canola | nucleus | 24.74 | 31.37 |
| CDY50608 | Canola | nucleus | 25.26 | 31.11 |
| CDX77420 | Canola | nucleus | 25.0 | 30.89 |
| CDY13041 | Canola | nucleus | 24.23 | 30.62 |
| CDY39545 | Canola | nucleus | 24.74 | 30.57 |
| CDY38085 | Canola | nucleus | 34.02 | 30.07 |
| CDY09259 | Canola | nucleus | 27.84 | 29.83 |
| CDX85486 | Canola | nucleus | 33.76 | 29.64 |
| CDX76506 | Canola | nucleus | 27.84 | 29.51 |
| CDY23108 | Canola | nucleus | 25.26 | 28.82 |
| HORVU5Hr1G105770.2 | Barley | nucleus | 38.66 | 28.79 |
| CDY58547 | Canola | nucleus | 33.51 | 28.63 |
| CDY69818 | Canola | nucleus | 28.61 | 28.46 |
| CDY16977 | Canola | nucleus | 32.22 | 28.34 |
| CDX93842 | Canola | nucleus | 35.57 | 28.34 |
| CDY01288 | Canola | nucleus | 35.82 | 28.25 |
| CDY01562 | Canola | nucleus | 28.35 | 27.99 |
| CDX92026 | Canola | nucleus | 31.96 | 27.68 |
| CDY28731 | Canola | nucleus | 30.93 | 27.52 |
| CDX74228 | Canola | nucleus | 31.96 | 27.25 |
| CDX99415 | Canola | nucleus | 26.8 | 27.08 |
| CDX69418 | Canola | nucleus | 33.51 | 26.69 |
| CDX70290 | Canola | nucleus | 24.23 | 25.9 |
| CDY10361 | Canola | nucleus | 26.03 | 25.19 |
| Zm00001d034433_P003 | Maize | nucleus | 39.69 | 24.8 |
| CDY44649 | Canola | nucleus | 27.84 | 22.74 |
| CDY12723 | Canola | nucleus | 26.55 | 21.68 |
| CDY01180 | Canola | nucleus | 26.29 | 21.38 |
| CDX78902 | Canola | nucleus | 26.03 | 19.54 |
| CDY43157 | Canola | cytosol | 2.58 | 11.11 |
| CDX84097 | Canola | nucleus | 6.19 | 8.92 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:A0A078FA81 | UniProt:A0A078FA81 | EnsemblPlants:CDY10311 | ProteinID:CDY10311 |
| ProteinID:CDY10311.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00032165001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 |
| PANTHER:PTHR10015 | PANTHER:PTHR10015:SF139 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EE0F0E | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
BnaC05g29680DBnaC05g29680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA81]
Coordinates
chrLK032002:+:416044..418249
Molecular Weight (calculated)
44962.4 Da
IEP (calculated)
4.625
GRAVY (calculated)
-0.903
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSYRFIKE EFPTGFIVSP SPPSSSTYSY LYSTSMAPND PTTSSSPQPI EGLHESGPPP FLTKTYDLVE DSRTNHVVSW SQAKNSFIVW DPQAFSTSLL
101: PRFFKHNNFS SFARQLNTYG FRKVNPDRWE FANEGFLRGQ KHLLKTIRRR KTSNNNQIQP PQSSSQEHSL DNCCIEVGRY DLDGEMDSLK QDKQVLVMEL
201: VKLRHQQEST KVYLKLIEEK LKKTESKQQQ MMSFLARAMQ NPDFLQQLME QKEKRKEMEE AISKKRQRPI DQGTRNVVTV EDYDDDDSAY MKQEMYGDLS
301: GFEMPELDSL AMHIQGLGDQ FTRKEVLDVE KRDEEGEQEG YQKVNNEIYG EGFWEDMLNE GQNFDFEGDE ENVDVLIEQL GYLGSSSN
101: PRFFKHNNFS SFARQLNTYG FRKVNPDRWE FANEGFLRGQ KHLLKTIRRR KTSNNNQIQP PQSSSQEHSL DNCCIEVGRY DLDGEMDSLK QDKQVLVMEL
201: VKLRHQQEST KVYLKLIEEK LKKTESKQQQ MMSFLARAMQ NPDFLQQLME QKEKRKEMEE AISKKRQRPI DQGTRNVVTV EDYDDDDSAY MKQEMYGDLS
301: GFEMPELDSL AMHIQGLGDQ FTRKEVLDVE KRDEEGEQEG YQKVNNEIYG EGFWEDMLNE GQNFDFEGDE ENVDVLIEQL GYLGSSSN
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.