Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76506 | Canola | nucleus | 95.86 | 94.81 |
| CDY69818 | Canola | nucleus | 85.08 | 78.97 |
| CDY01562 | Canola | nucleus | 84.53 | 77.86 |
| CDX99415 | Canola | nucleus | 80.66 | 76.04 |
| AT4G18880.1 | Thale cress | nucleus | 83.15 | 75.06 |
| CDY13041 | Canola | nucleus | 53.04 | 62.54 |
| CDY23108 | Canola | nucleus | 55.52 | 59.12 |
| CDX78902 | Canola | nucleus | 77.35 | 54.16 |
| KRH11063 | Soybean | nucleus | 55.8 | 51.53 |
| KRH21206 | Soybean | nucleus | 55.25 | 51.02 |
| KRH42919 | Soybean | nucleus | 55.8 | 50.25 |
| VIT_10s0003g01770.t01 | Wine grape | nucleus | 48.07 | 50.14 |
| KRH59030 | Soybean | nucleus | 54.97 | 49.5 |
| GSMUA_Achr8P27750_001 | Banana | nucleus | 28.73 | 47.06 |
| Solyc02g072000.2.1 | Tomato | nucleus | 50.55 | 44.85 |
| Solyc03g006000.2.1 | Tomato | nucleus | 49.45 | 44.64 |
| PGSC0003DMT400071487 | Potato | nucleus | 49.17 | 44.17 |
| EES01479 | Sorghum | nucleus | 44.2 | 36.87 |
| Os01t0749300-02 | Rice | nucleus | 44.75 | 36.82 |
| Zm00001d012749_P001 | Maize | nucleus | 43.92 | 36.72 |
| TraesCS3A01G289200.1 | Wheat | nucleus | 43.09 | 36.11 |
| HORVU3Hr1G071550.3 | Barley | nucleus | 42.82 | 35.88 |
| TraesCS3B01G323800.1 | Wheat | nucleus | 43.09 | 35.37 |
| CDX90626 | Canola | nucleus | 25.69 | 34.57 |
| CDY29054 | Canola | nucleus | 25.14 | 34.34 |
| HORVU1Hr1G081300.1 | Barley | nucleus | 40.88 | 34.34 |
| GSMUA_Achr6P31750_001 | Banana | nucleus | 45.86 | 34.16 |
| TraesCS3D01G289000.1 | Wheat | nucleus | 39.23 | 34.13 |
| GSMUA_Achr3P15640_001 | Banana | nucleus | 42.54 | 34.0 |
| CDX95313 | Canola | nucleus | 24.31 | 32.84 |
| Zm00001d010812_P001 | Maize | nucleus | 40.61 | 32.74 |
| TraesCS1A01G350400.2 | Wheat | nucleus | 39.78 | 32.51 |
| CDX90627 | Canola | nucleus | 25.69 | 32.4 |
| Os05t0530400-01 | Rice | nucleus | 40.88 | 32.24 |
| CDY43158 | Canola | nucleus | 27.07 | 32.03 |
| CDY14893 | Canola | nucleus | 22.38 | 30.92 |
| EES18551 | Sorghum | nucleus | 40.61 | 30.88 |
| Zm00001d038746_P001 | Maize | nucleus | 39.5 | 30.49 |
| CDX94887 | Canola | nucleus | 22.65 | 30.37 |
| CDY11470 | Canola | nucleus | 23.48 | 29.82 |
| CDX76693 | Canola | nucleus | 22.93 | 29.12 |
| CDX94884 | Canola | nucleus | 22.65 | 28.57 |
| CDY34229 | Canola | nucleus | 29.56 | 28.23 |
| CDY10311 | Canola | nucleus | 29.83 | 27.84 |
| CDY10674 | Canola | nucleus | 29.56 | 27.51 |
| CDY46607 | Canola | nucleus | 28.18 | 27.49 |
| CDX78797 | Canola | nucleus | 32.6 | 27.44 |
| CDY46606 | Canola | nucleus | 29.01 | 27.42 |
| CDY12723 | Canola | nucleus | 35.36 | 26.95 |
| CDX85486 | Canola | nucleus | 32.87 | 26.92 |
| CDY28731 | Canola | nucleus | 32.32 | 26.83 |
| CDY60785 | Canola | nucleus | 32.32 | 26.77 |
| CDY01180 | Canola | nucleus | 34.81 | 26.42 |
| CDX74228 | Canola | nucleus | 33.15 | 26.37 |
| CDY21503 | Canola | nucleus | 25.41 | 26.36 |
| CDY58547 | Canola | nucleus | 32.87 | 26.21 |
| CDX92958 | Canola | nucleus | 24.86 | 26.16 |
| CDY38085 | Canola | nucleus | 31.49 | 25.97 |
| CDX92026 | Canola | nucleus | 32.04 | 25.89 |
| CDY16977 | Canola | nucleus | 31.22 | 25.62 |
| CDX93024 | Canola | nucleus | 21.55 | 25.49 |
| CDX70290 | Canola | nucleus | 25.14 | 25.07 |
| CDX83217 | Canola | nucleus | 25.69 | 24.93 |
| CDX77420 | Canola | nucleus | 21.27 | 24.52 |
| CDY39545 | Canola | nucleus | 21.27 | 24.52 |
| CDY50608 | Canola | nucleus | 21.27 | 24.44 |
| CDX69418 | Canola | nucleus | 32.6 | 24.23 |
| CDY10361 | Canola | nucleus | 25.41 | 22.94 |
| CDX93842 | Canola | nucleus | 30.66 | 22.79 |
| CDY01288 | Canola | nucleus | 30.39 | 22.36 |
| CDY43157 | Canola | cytosol | 5.25 | 21.11 |
| CDY44649 | Canola | nucleus | 21.55 | 16.42 |
| CDX84097 | Canola | nucleus | 4.42 | 5.95 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:A0A078F894 | UniProt:A0A078F894 | EnsemblPlants:CDY09259 | ProteinID:CDY09259 |
| ProteinID:CDY09259.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00001515001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PFAM:PF11414 |
| PRINTS:PR00056 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF154 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EBFAD2 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaC03g62890DBnaC03g62890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F894]
Coordinates
chrLK031994:-:64364..65923
Molecular Weight (calculated)
41735.8 Da
IEP (calculated)
4.894
GRAVY (calculated)
-0.908
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MDESNHGGSL PPFLTKTYEM VDDSSSDSIV SWSQSNKSFI VWNPPEFSRD LLPKFFKHNN FASFIRQLNT YGFRKADPEQ WEFANDDFVR GQPHLMKNIH
101: RRKPVHSHSS PSLQPHPLTD SERQRMNDQI ERLTKEKEVL LQELHKQEKE REMFQQQVKE LKDQLQHMEK RQKTMVSFVS QVLEKPELAL NLSPCLLETN
201: ERKRRFPRIG LEGSTSPSSQ ARELQVEQLE SSIAVWENLV SEDSSESLGQ EKRSMMTLDV DESSTCPESP PLPCIQLSID TCPNCPTSPR TIDMNSEPDT
301: SKEPPPAAGV NDVFWQQLLT ENPGSTEQKE VQAERKDDKA EECWWDLRNV NTLTEQLGHL TS
101: RRKPVHSHSS PSLQPHPLTD SERQRMNDQI ERLTKEKEVL LQELHKQEKE REMFQQQVKE LKDQLQHMEK RQKTMVSFVS QVLEKPELAL NLSPCLLETN
201: ERKRRFPRIG LEGSTSPSSQ ARELQVEQLE SSIAVWENLV SEDSSESLGQ EKRSMMTLDV DESSTCPESP PLPCIQLSID TCPNCPTSPR TIDMNSEPDT
301: SKEPPPAAGV NDVFWQQLLT ENPGSTEQKE VQAERKDDKA EECWWDLRNV NTLTEQLGHL TS
001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S
Arabidopsis Description
HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.