Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020988.1-P | Field mustard | nucleus | 93.17 | 97.71 |
| CDY09259 | Canola | nucleus | 94.81 | 95.86 |
| CDY69818 | Canola | nucleus | 84.97 | 79.74 |
| CDY01562 | Canola | nucleus | 84.7 | 78.88 |
| CDX99415 | Canola | nucleus | 79.78 | 76.04 |
| AT4G18880.1 | Thale cress | nucleus | 83.06 | 75.81 |
| CDY13041 | Canola | nucleus | 51.37 | 61.24 |
| CDY23108 | Canola | nucleus | 54.1 | 58.24 |
| CDX78902 | Canola | nucleus | 76.5 | 54.16 |
| KRH11063 | Soybean | nucleus | 55.19 | 51.53 |
| KRH21206 | Soybean | nucleus | 54.64 | 51.02 |
| VIT_10s0003g01770.t01 | Wine grape | nucleus | 47.27 | 49.86 |
| KRH42919 | Soybean | nucleus | 54.64 | 49.75 |
| KRH59030 | Soybean | nucleus | 53.55 | 48.76 |
| GSMUA_Achr8P27750_001 | Banana | nucleus | 28.14 | 46.61 |
| Solyc02g072000.2.1 | Tomato | nucleus | 51.09 | 45.83 |
| Solyc03g006000.2.1 | Tomato | nucleus | 48.91 | 44.64 |
| PGSC0003DMT400071487 | Potato | nucleus | 48.63 | 44.17 |
| EES01479 | Sorghum | nucleus | 44.26 | 37.33 |
| Os01t0749300-02 | Rice | nucleus | 44.81 | 37.27 |
| Zm00001d012749_P001 | Maize | nucleus | 43.72 | 36.95 |
| TraesCS3A01G289200.1 | Wheat | nucleus | 43.17 | 36.57 |
| HORVU3Hr1G071550.3 | Barley | nucleus | 42.9 | 36.34 |
| TraesCS3B01G323800.1 | Wheat | nucleus | 43.17 | 35.83 |
| TraesCS3D01G289000.1 | Wheat | nucleus | 39.34 | 34.62 |
| CDX90626 | Canola | nucleus | 25.41 | 34.57 |
| GSMUA_Achr6P31750_001 | Banana | nucleus | 45.9 | 34.57 |
| CDY29054 | Canola | nucleus | 24.86 | 34.34 |
| HORVU1Hr1G081300.1 | Barley | nucleus | 40.44 | 34.34 |
| GSMUA_Achr3P15640_001 | Banana | nucleus | 42.35 | 34.22 |
| CDX95313 | Canola | nucleus | 24.04 | 32.84 |
| TraesCS1A01G350400.2 | Wheat | nucleus | 39.34 | 32.51 |
| CDX90627 | Canola | nucleus | 25.41 | 32.4 |
| Zm00001d010812_P001 | Maize | nucleus | 39.62 | 32.29 |
| Os05t0530400-01 | Rice | nucleus | 40.16 | 32.03 |
| CDY43158 | Canola | nucleus | 26.23 | 31.37 |
| CDY14893 | Canola | nucleus | 22.4 | 31.3 |
| EES18551 | Sorghum | nucleus | 39.89 | 30.67 |
| CDX94887 | Canola | nucleus | 22.4 | 30.37 |
| Zm00001d038746_P001 | Maize | nucleus | 38.52 | 30.06 |
| CDY11470 | Canola | nucleus | 23.22 | 29.82 |
| CDX76693 | Canola | nucleus | 22.68 | 29.12 |
| CDX94884 | Canola | nucleus | 22.4 | 28.57 |
| CDY34229 | Canola | nucleus | 29.23 | 28.23 |
| CDY10311 | Canola | nucleus | 29.51 | 27.84 |
| CDY10674 | Canola | nucleus | 29.23 | 27.51 |
| CDY46607 | Canola | nucleus | 27.87 | 27.49 |
| CDY46606 | Canola | nucleus | 28.69 | 27.42 |
| CDY12723 | Canola | nucleus | 34.97 | 26.95 |
| CDX78797 | Canola | nucleus | 31.42 | 26.74 |
| CDX85486 | Canola | nucleus | 32.24 | 26.7 |
| CDY01180 | Canola | nucleus | 34.7 | 26.62 |
| CDY28731 | Canola | nucleus | 31.69 | 26.61 |
| CDX74228 | Canola | nucleus | 32.79 | 26.37 |
| CDX92958 | Canola | nucleus | 24.59 | 26.16 |
| CDY60785 | Canola | nucleus | 31.15 | 26.09 |
| CDY21503 | Canola | nucleus | 24.86 | 26.07 |
| CDY58547 | Canola | nucleus | 31.97 | 25.77 |
| CDX92026 | Canola | nucleus | 31.42 | 25.67 |
| CDY38085 | Canola | nucleus | 30.6 | 25.51 |
| CDX93024 | Canola | nucleus | 21.31 | 25.49 |
| CDY16977 | Canola | nucleus | 30.6 | 25.4 |
| CDX70290 | Canola | nucleus | 24.86 | 25.07 |
| CDX83217 | Canola | nucleus | 25.14 | 24.66 |
| CDY39545 | Canola | nucleus | 21.04 | 24.52 |
| CDX77420 | Canola | nucleus | 21.04 | 24.52 |
| CDY50608 | Canola | nucleus | 21.04 | 24.44 |
| CDX69418 | Canola | nucleus | 31.15 | 23.41 |
| CDY10361 | Canola | nucleus | 25.14 | 22.94 |
| CDX93842 | Canola | nucleus | 29.51 | 22.18 |
| CDY01288 | Canola | nucleus | 29.23 | 21.75 |
| CDY43157 | Canola | cytosol | 5.19 | 21.11 |
| CDY44649 | Canola | nucleus | 20.49 | 15.79 |
| CDX84097 | Canola | nucleus | 4.1 | 5.58 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:A0A078CH04 | EnsemblPlants:CDX76506 | ProteinID:CDX76506 | ProteinID:CDX76506.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00126929001 |
| InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PFAM:PF11414 | PRINTS:PR00056 |
| PANTHER:PTHR10015 | PANTHER:PTHR10015:SF154 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EE5226 | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
BnaA08g08940D
Coordinates
chrLK031807:+:1665356..1666741
Molecular Weight (calculated)
41918.9 Da
IEP (calculated)
5.025
GRAVY (calculated)
-0.924
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MDESNHGGSL PPFLTKTYEM VDDSSSDSIV SWSPQSNKSF IVWNPPEFSR DLLPKFFKHN NFASFIRQLN TYGFRKADPE QWEFANDDFV RGQPHLMKNI
101: HRRKPVHSHS SPSLQPHPLT DSERQRMNDQ IQRLTKEKEV LLEELHKQEK EREMFQQQVK ELKDQLQHME KRQKTMASFV SQVLEKPELA LNLSPCLQET
201: NERKRRFPRI GLEGSTSPSS QARELQVEQL ESSIAVWENL VSEDSSESLG QETRSMMTLD VDESSTCPES PPLPCIQLSI DTCPTSPRTI DMNSEPDASK
301: EQTIVAPPPP GAGGNDVFWQ QLLTENPGST GQKEVQSERK DDKAEKCWWD SRNVNTLTEQ LGHLTS
101: HRRKPVHSHS SPSLQPHPLT DSERQRMNDQ IQRLTKEKEV LLEELHKQEK EREMFQQQVK ELKDQLQHME KRQKTMASFV SQVLEKPELA LNLSPCLQET
201: NERKRRFPRI GLEGSTSPSS QARELQVEQL ESSIAVWENL VSEDSSESLG QETRSMMTLD VDESSTCPES PPLPCIQLSI DTCPTSPRTI DMNSEPDASK
301: EQTIVAPPPP GAGGNDVFWQ QLLTENPGST GQKEVQSERK DDKAEKCWWD SRNVNTLTEQ LGHLTS
001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S
Arabidopsis Description
HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.