Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09259 | Canola | nucleus | 76.04 | 80.66 |
| CDY01562 | Canola | nucleus | 82.55 | 80.66 |
| CDX76506 | Canola | nucleus | 76.04 | 79.78 |
| AT4G18880.1 | Thale cress | nucleus | 82.81 | 79.3 |
| CDY69818 | Canola | nucleus | 79.95 | 78.72 |
| CDX78902 | Canola | nucleus | 89.06 | 66.15 |
| CDY13041 | Canola | nucleus | 50.0 | 62.54 |
| CDY23108 | Canola | nucleus | 52.34 | 59.12 |
| KRH11063 | Soybean | nucleus | 54.69 | 53.57 |
| KRH21206 | Soybean | nucleus | 54.43 | 53.32 |
| VIT_10s0003g01770.t01 | Wine grape | nucleus | 47.14 | 52.16 |
| KRH42919 | Soybean | nucleus | 53.65 | 51.24 |
| KRH59030 | Soybean | nucleus | 53.12 | 50.75 |
| Solyc03g006000.2.1 | Tomato | nucleus | 48.96 | 46.88 |
| PGSC0003DMT400071487 | Potato | nucleus | 48.7 | 46.4 |
| Solyc02g072000.2.1 | Tomato | nucleus | 49.22 | 46.32 |
| GSMUA_Achr8P27750_001 | Banana | nucleus | 26.56 | 46.15 |
| EES01479 | Sorghum | nucleus | 43.23 | 38.25 |
| Zm00001d012749_P001 | Maize | nucleus | 42.71 | 37.88 |
| TraesCS3A01G289200.1 | Wheat | nucleus | 41.67 | 37.04 |
| Os01t0749300-02 | Rice | nucleus | 42.19 | 36.82 |
| HORVU3Hr1G071550.3 | Barley | nucleus | 41.15 | 36.57 |
| TraesCS3B01G323800.1 | Wheat | nucleus | 41.41 | 36.05 |
| CDX90626 | Canola | nucleus | 24.48 | 34.94 |
| TraesCS3D01G289000.1 | Wheat | nucleus | 37.76 | 34.86 |
| CDY29054 | Canola | nucleus | 23.7 | 34.34 |
| GSMUA_Achr3P15640_001 | Banana | nucleus | 40.1 | 34.0 |
| CDX95313 | Canola | nucleus | 23.7 | 33.96 |
| HORVU1Hr1G081300.1 | Barley | nucleus | 38.02 | 33.87 |
| Zm00001d010812_P001 | Maize | nucleus | 39.58 | 33.85 |
| GSMUA_Achr6P31750_001 | Banana | nucleus | 42.45 | 33.54 |
| CDX90627 | Canola | nucleus | 24.74 | 33.1 |
| TraesCS1A01G350400.2 | Wheat | nucleus | 37.76 | 32.73 |
| Os05t0530400-01 | Rice | nucleus | 38.8 | 32.46 |
| CDY43158 | Canola | nucleus | 25.26 | 31.7 |
| Zm00001d038746_P001 | Maize | nucleus | 38.54 | 31.56 |
| EES18551 | Sorghum | nucleus | 39.06 | 31.51 |
| CDY14893 | Canola | nucleus | 20.83 | 30.53 |
| CDX94887 | Canola | nucleus | 21.09 | 30.0 |
| CDY11470 | Canola | nucleus | 21.88 | 29.47 |
| CDX76693 | Canola | nucleus | 21.88 | 29.47 |
| CDX94884 | Canola | nucleus | 21.35 | 28.57 |
| CDX78797 | Canola | nucleus | 31.51 | 28.14 |
| CDY12723 | Canola | nucleus | 34.64 | 28.0 |
| CDY34229 | Canola | nucleus | 27.6 | 27.97 |
| CDY01180 | Canola | nucleus | 34.11 | 27.46 |
| CDY60785 | Canola | nucleus | 30.99 | 27.23 |
| CDY46607 | Canola | nucleus | 26.3 | 27.22 |
| CDY21503 | Canola | nucleus | 24.74 | 27.22 |
| CDY46606 | Canola | nucleus | 27.08 | 27.15 |
| CDX85486 | Canola | nucleus | 31.25 | 27.15 |
| CDY28731 | Canola | nucleus | 30.47 | 26.83 |
| CDY10311 | Canola | nucleus | 27.08 | 26.8 |
| CDY10674 | Canola | nucleus | 27.08 | 26.74 |
| CDY58547 | Canola | nucleus | 31.51 | 26.65 |
| CDY16977 | Canola | nucleus | 30.47 | 26.53 |
| CDY38085 | Canola | nucleus | 29.95 | 26.2 |
| CDX92958 | Canola | nucleus | 23.44 | 26.16 |
| CDX74228 | Canola | nucleus | 30.73 | 25.93 |
| CDX70290 | Canola | nucleus | 24.48 | 25.9 |
| CDX92026 | Canola | nucleus | 30.21 | 25.89 |
| CDX93024 | Canola | nucleus | 20.31 | 25.49 |
| CDX83217 | Canola | nucleus | 24.74 | 25.47 |
| CDX69418 | Canola | nucleus | 31.77 | 25.05 |
| CDX77420 | Canola | nucleus | 20.31 | 24.84 |
| CDY39545 | Canola | nucleus | 20.31 | 24.84 |
| CDY50608 | Canola | nucleus | 20.31 | 24.76 |
| CDY10361 | Canola | nucleus | 24.74 | 23.69 |
| CDX93842 | Canola | nucleus | 28.39 | 22.38 |
| CDY01288 | Canola | nucleus | 28.39 | 22.15 |
| CDY43157 | Canola | cytosol | 4.95 | 21.11 |
| CDY44649 | Canola | nucleus | 20.31 | 16.42 |
| CDX84097 | Canola | nucleus | 4.43 | 6.32 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:A0A078EBE3 | EnsemblPlants:CDX99415 | ProteinID:CDX99415 | ProteinID:CDX99415.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00107744001 |
| InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 | PANTHER:PTHR10015 |
| PANTHER:PTHR10015:SF154 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EC6539 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g11370D
Coordinates
chrLK031910:+:560234..561585
Molecular Weight (calculated)
44216.5 Da
IEP (calculated)
4.907
GRAVY (calculated)
-0.912
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MDESNHGGSS SSLPPFLTKT YEMVDDSSSD SIVSWSRSNR SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQSQQ NPLTDSERLR MSSQIERLTK EKEGLLQKLH KQEQERDVFE QHVKTLKDQL QHMEKRQKTM DSYVSQVMET PELALNLSPC
201: LPDTNERKRR LPRMLEDNRT CVVVREEGST SASDETEHQV EQLEVWENLV SVSDDSCEGM AQSTRSMMIL DVDESSTCPQ SPPLSCIQLS IDTCPKSPPV
301: KIMDMNSEPD VSEEQNIVAP PPPPAAGVND VFWQQFLTEN PGSTEQREVQ PERKEDKGED RSEKCWWTSR NVNAITEQLG HLTS
101: NIHRRKPVHS HSLPNLQSQQ NPLTDSERLR MSSQIERLTK EKEGLLQKLH KQEQERDVFE QHVKTLKDQL QHMEKRQKTM DSYVSQVMET PELALNLSPC
201: LPDTNERKRR LPRMLEDNRT CVVVREEGST SASDETEHQV EQLEVWENLV SVSDDSCEGM AQSTRSMMIL DVDESSTCPQ SPPLSCIQLS IDTCPKSPPV
301: KIMDMNSEPD VSEEQNIVAP PPPPAAGVND VFWQQFLTEN PGSTEQREVQ PERKEDKGED RSEKCWWTSR NVNAITEQLG HLTS
001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S
Arabidopsis Description
HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.