Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G396000.1 | Wheat | nucleus | 94.78 | 96.37 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 96.15 | 95.11 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 89.56 | 87.63 |
| Os10t0419300-00 | Rice | nucleus | 74.45 | 75.7 |
| EER94213 | Sorghum | nucleus | 74.45 | 74.86 |
| Zm00001d032923_P002 | Maize | nucleus | 69.78 | 71.15 |
| TraesCS4D01G276500.1 | Wheat | nucleus | 57.42 | 61.29 |
| Solyc06g053960.2.1 | Tomato | nucleus | 22.8 | 58.45 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 43.96 | 51.95 |
| Bra012829.1-P | Field mustard | nucleus | 34.89 | 51.21 |
| CDX95313 | Canola | nucleus | 36.26 | 49.25 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 45.05 | 49.25 |
| AT3G51910.1 | Thale cress | nucleus | 36.54 | 48.9 |
| TraesCS5D01G445100.1 | Wheat | nucleus | 46.43 | 48.56 |
| VIT_00s0179g00150.t01 | Wine grape | nucleus | 46.98 | 47.37 |
| Bra012828.1-P | Field mustard | nucleus | 34.89 | 47.21 |
| CDX90626 | Canola | nucleus | 34.89 | 47.21 |
| CDY29054 | Canola | nucleus | 34.34 | 47.17 |
| KRG95588 | Soybean | nucleus | 47.25 | 46.49 |
| KRH67266 | Soybean | nucleus | 49.18 | 46.37 |
| CDX90627 | Canola | nucleus | 36.26 | 45.99 |
| CDX94887 | Canola | nucleus | 34.07 | 45.93 |
| KRG91367 | Soybean | nucleus | 45.88 | 45.63 |
| TraesCS5D01G393200.1 | Wheat | nucleus | 47.25 | 45.62 |
| KRH32059 | Soybean | nucleus | 42.58 | 45.45 |
| KRH31657 | Soybean | nucleus | 42.03 | 45.4 |
| TraesCS2D01G087400.1 | Wheat | nucleus | 49.73 | 43.93 |
| KRH35452 | Soybean | nucleus | 43.68 | 43.44 |
| Solyc09g082670.2.1 | Tomato | nucleus | 42.03 | 42.98 |
| PGSC0003DMT400049793 | Potato | nucleus | 42.86 | 42.86 |
| PGSC0003DMT400016511 | Potato | nucleus | 42.58 | 42.82 |
| PGSC0003DMT400049795 | Potato | nucleus | 42.03 | 42.5 |
| Solyc09g065660.2.1 | Tomato | nucleus | 43.41 | 42.47 |
| CDY34229 | Canola | nucleus | 43.68 | 41.95 |
| CDY10674 | Canola | nucleus | 44.51 | 41.65 |
| CDX94884 | Canola | nucleus | 32.69 | 41.46 |
| AT5G43840.1 | Thale cress | nucleus | 31.87 | 41.13 |
| Bra001885.1-P | Field mustard | nucleus | 43.96 | 40.92 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 39.56 | 40.91 |
| CDY46606 | Canola | nucleus | 42.86 | 40.73 |
| CDY10311 | Canola | nucleus | 43.41 | 40.72 |
| CDY46607 | Canola | nucleus | 41.21 | 40.43 |
| AT3G63350.1 | Thale cress | nucleus | 31.32 | 40.43 |
| PGSC0003DMT400041944 | Potato | nucleus | 38.19 | 40.41 |
| Bra033913.1-P | Field mustard | nucleus | 45.05 | 40.29 |
| Bra023800.1-P | Field mustard | nucleus | 43.96 | 40.2 |
| AT3G22830.1 | Thale cress | nucleus | 44.51 | 39.9 |
| CDY11470 | Canola | nucleus | 31.04 | 39.65 |
| CDX76693 | Canola | nucleus | 31.04 | 39.65 |
| Bra007739.1-P | Field mustard | nucleus | 31.04 | 39.65 |
| CDX92958 | Canola | nucleus | 37.36 | 39.53 |
| CDY14893 | Canola | nucleus | 28.3 | 39.31 |
| TraesCS3D01G280600.1 | Wheat | nucleus | 25.82 | 39.0 |
| TraesCS7D01G367700.1 | Wheat | nucleus | 27.47 | 37.74 |
| Bra035993.1-P | Field mustard | nucleus | 28.85 | 37.37 |
| TraesCS4D01G358900.1 | Wheat | nucleus | 28.3 | 37.32 |
| TraesCS3D01G385900.1 | Wheat | nucleus | 27.75 | 33.01 |
| TraesCS3D01G386000.1 | Wheat | nucleus | 27.2 | 31.53 |
| TraesCS4D01G239600.1 | Wheat | nucleus | 32.69 | 30.99 |
| TraesCS3D01G227200.1 | Wheat | nucleus | 26.65 | 30.22 |
| TraesCS5D01G553300.1 | Wheat | nucleus | 42.86 | 29.89 |
| TraesCS6D01G083800.1 | Wheat | nucleus | 34.62 | 27.51 |
| TraesCS2D01G211400.1 | Wheat | nucleus | 35.44 | 25.85 |
| TraesCS3D01G289000.1 | Wheat | nucleus | 27.47 | 24.04 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042802 | GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 |
| PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF258 | SMART:SM00415 |
| SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS1D01G382900 | EnsemblPlants:TraesCS1D01G382900.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
No Description!
Coordinates
chr1D:-:457849896..457852204
Molecular Weight (calculated)
41406.5 Da
IEP (calculated)
4.779
GRAVY (calculated)
-0.846
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAMPPEGIV KEEEVLLHEE HTHPQAGPQQ QQQRQDGALP RPMEGLHEAG PPPFLTKTYD LVEDPATDQV VSWGRAGNTF VVWDPHVFAE ALLPRLFKHS
101: NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQRHLLKMI KRRKPPSNAP SSQQQALTSC LEVGEFGFEE EIDRLKRDKN LLITEVVKLR QEQQATKDNV
201: QAMEGRLRAA EQRQAQMMGF LARAMRNPHF FQQLVQKQDK RKELEDAISK KRRRPIDNAP FYGPGATTSQ SEQLDSQFLF DSGVLTEPGM NGMENLAQNI
301: QELGQGKTDE EKKDEANGQL DINNDFWAEL FSDDFGDGDG SGLSELEGRR PEDIDELAQQ LGFS
101: NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQRHLLKMI KRRKPPSNAP SSQQQALTSC LEVGEFGFEE EIDRLKRDKN LLITEVVKLR QEQQATKDNV
201: QAMEGRLRAA EQRQAQMMGF LARAMRNPHF FQQLVQKQDK RKELEDAISK KRRRPIDNAP FYGPGATTSQ SEQLDSQFLF DSGVLTEPGM NGMENLAQNI
301: QELGQGKTDE EKKDEANGQL DINNDFWAEL FSDDFGDGDG SGLSELEGRR PEDIDELAQQ LGFS
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.