Factsheet for TraesCS4D01G358900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G373900.2
TraesCS1A01G374100.1
TraesCS1B01G393900.3
TraesCS1B01G394200.1
TraesCS1D01G380600.1
TraesCS1D01G380700.1
TraesCS2A01G007200.1
TraesCS2B01G013500.2
TraesCS2D01G008300.2
TraesCS3A01G210700.1
TraesCS3B01G241300.1
TraesCS3D01G213600.1
TraesCS5A01G193300.2
TraesCS5B01G188700.1
TraesCS5D01G195800.2
TraesCS6A01G051100.1
TraesCS6B01G067600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	TraesCS1A01G373900.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS1A01G374100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G393900.3	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G394200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380700.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2A01G007200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2B01G013500.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS2D01G008300.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS6A01G051100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS6B01G067600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS3A01G210700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3B01G241300.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3D01G213600.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5A01G193300.2	AT3G01300.1	21798944
AT3G24520.1	TraesCS5B01G188700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5D01G195800.2	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G548700.1	Wheat	nucleus	90.94	91.61
TraesCS4B01G383300.1	Wheat	nucleus	89.86	90.18
TraesCS3B01G568300.1	Wheat	nucleus	89.13	89.78
HORVU4Hr1G090850.1	Barley	nucleus	79.71	65.48
Zm00001d016255_P001	Maize	nucleus	56.52	60.7
KXG29862	Sorghum	nucleus	57.61	59.55
TraesCS7D01G367700.1	Wheat	nucleus	53.99	56.23
Os02t0232000-01	Rice	nucleus	60.14	55.7
GSMUA_Achr4P30990_001	Banana	nucleus	51.09	48.79
TraesCS3D01G280600.1	Wheat	nucleus	39.49	45.23
GSMUA_Achr10P...	Banana	nucleus	48.91	44.26
Bra013253.1-P	Field mustard	nucleus	36.59	35.94
KRH39283	Soybean	nucleus	40.94	35.31
CDX93024	Canola	nucleus	39.13	35.29
Bra015050.1-P	Field mustard	nucleus	38.41	34.3
CDY50608	Canola	nucleus	38.77	33.97
CDX77420	Canola	nucleus	38.41	33.76
CDY39545	Canola	nucleus	38.41	33.76
TraesCS3D01G385900.1	Wheat	nucleus	37.32	33.66
TraesCS3D01G227200.1	Wheat	nucleus	38.41	33.02
AT3G24520.1	Thale cress	nucleus	39.13	32.73
VIT_11s0016g03940.t01	Wine grape	nucleus	38.41	32.22
TraesCS3D01G386000.1	Wheat	nucleus	35.87	31.53
TraesCS5D01G445100.1	Wheat	nucleus	37.32	29.6
CDY43158	Canola	nucleus	31.52	28.43
TraesCS1D01G382900.1	Wheat	nucleus	37.32	28.3
Solyc12g007070.1.1	Tomato	nucleus	36.59	27.37
TraesCS4D01G276500.1	Wheat	nucleus	33.33	26.98
PGSC0003DMT400001025	Potato	nucleus	35.87	26.9
TraesCS5D01G393200.1	Wheat	nucleus	34.06	24.93
TraesCS4D01G239600.1	Wheat	nucleus	34.06	24.48
TraesCS2D01G087400.1	Wheat	nucleus	35.14	23.54
TraesCS6D01G083800.1	Wheat	nucleus	34.06	20.52
TraesCS2D01G211400.1	Wheat	nucleus	35.14	19.44
TraesCS5D01G553300.1	Wheat	nucleus	36.59	19.35
TraesCS3D01G289000.1	Wheat	nucleus	27.54	18.27
CDY43157	Canola	cytosol	1.09	3.33

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF171	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS4D01G358900	EnsemblPlants:TraesCS4D01G358900.1
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:506339317..506340266

Molecular Weight (calculated)

30271.0 Da

IEP (calculated)

6.941

GRAVY (calculated)

-0.390

Length

276 amino acids

Sequence
(BLAST)

001: MSSGGGIGCS GSGDGDGGMV APFVAKTYAM VDDPATDAVV AWGPASNSFV VADPFAFSRA LLPAHFKHAN FSSFVRQLNT YGFRKVDPDR WEFAHACFLR
101: GQTHLLPRIV RRRSGGKRGK EDADEEDEDI SSKMLAMEVV RLKEEQRATE DRLAAMWRRV QDAERRPKLM LAFLLKVVGD PDVLRRLVGN SSSGGVLFPG
201: EGAEAKRRRL LLDGEGQVSK KKMRVDGDGL LCGINRQDAF VREPRVDFTG FYTGGDGFSE VPVDDPPYAF PMDGGY

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.