Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3A01G393200.1 | Wheat | nucleus | 92.99 | 92.99 |
TraesCS3B01G425200.1 | Wheat | nucleus | 86.94 | 89.8 |
TraesCS3D01G385900.1 | Wheat | nucleus | 85.99 | 88.24 |
HORVU3Hr1G088890.2 | Barley | nucleus | 76.75 | 83.39 |
TraesCS3D01G227200.1 | Wheat | nucleus | 84.08 | 82.24 |
Os01t0625300-01 | Rice | nucleus | 67.52 | 62.54 |
Zm00001d044168_P001 | Maize | nucleus | 64.33 | 61.03 |
EES01103 | Sorghum | nucleus | 66.56 | 57.26 |
Zm00001d011406_P001 | Maize | nucleus | 63.69 | 51.68 |
GSMUA_Achr3P15740_001 | Banana | nucleus | 39.17 | 44.57 |
TraesCS3D01G280600.1 | Wheat | nucleus | 31.53 | 41.08 |
GSMUA_Achr7P24790_001 | Banana | nucleus | 26.11 | 39.23 |
GSMUA_Achr3P31860_001 | Banana | nucleus | 39.49 | 38.27 |
TraesCS4D01G358900.1 | Wheat | nucleus | 31.53 | 35.87 |
TraesCS7D01G367700.1 | Wheat | nucleus | 28.66 | 33.96 |
GSMUA_Achr8P27820_001 | Banana | nucleus | 37.26 | 32.23 |
CDX93024 | Canola | nucleus | 29.94 | 30.72 |
KRH39283 | Soybean | nucleus | 31.21 | 30.62 |
Bra015050.1-P | Field mustard | nucleus | 29.62 | 30.1 |
Bra013253.1-P | Field mustard | nucleus | 26.75 | 29.89 |
CDY50608 | Canola | nucleus | 29.94 | 29.84 |
CDX77420 | Canola | nucleus | 29.62 | 29.62 |
CDY39545 | Canola | nucleus | 29.62 | 29.62 |
VIT_11s0016g03940.t01 | Wine grape | nucleus | 30.89 | 29.48 |
AT3G24520.1 | Thale cress | nucleus | 29.62 | 28.18 |
TraesCS4D01G276500.1 | Wheat | nucleus | 30.25 | 27.86 |
CDY43158 | Canola | nucleus | 27.07 | 27.78 |
TraesCS5D01G445100.1 | Wheat | nucleus | 30.57 | 27.59 |
TraesCS1D01G382900.1 | Wheat | nucleus | 31.53 | 27.2 |
TraesCS5D01G393200.1 | Wheat | nucleus | 30.89 | 25.73 |
Solyc12g007070.1.1 | Tomato | nucleus | 29.94 | 25.47 |
PGSC0003DMT400001025 | Potato | nucleus | 29.62 | 25.27 |
TraesCS2D01G087400.1 | Wheat | nucleus | 30.25 | 23.06 |
TraesCS4D01G239600.1 | Wheat | nucleus | 25.8 | 21.09 |
TraesCS5D01G553300.1 | Wheat | nucleus | 31.53 | 18.97 |
TraesCS2D01G211400.1 | Wheat | nucleus | 29.62 | 18.64 |
TraesCS6D01G083800.1 | Wheat | nucleus | 26.75 | 18.34 |
TraesCS3D01G289000.1 | Wheat | nucleus | 22.93 | 17.31 |
CDY43157 | Canola | cytosol | 0.96 | 3.33 |
Protein Annotations
Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 |
ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF187 | SMART:SM00415 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS3D01G386000 |
EnsemblPlants:TraesCS3D01G386000.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3D:+:501413268..501414380
Molecular Weight (calculated)
34760.4 Da
IEP (calculated)
5.437
GRAVY (calculated)
-0.342
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGLHTELAL GLIGELETAP FVAKTYQLVS DPRTDAFVRW GRDNNSFLVT DVAGFSQLLL PCFFKHGNFS SFVRQLNSYG FRKVHPDRWE FAHESFLSGQ
101: KHLLPRIVRR KKKRGEASCS SLVGGGEQHV VANIGEEVEE EEDDEGREAL LEEVRRLRQE QTAIGEQLAR MSRRLQATEL RSDQLMPLLA RLDEDPNATS
201: LHLLQQAAEK KLQRMQLPSR DFASFPIVPP LHPAPSPLLA LGDTAMGGAR VGQWAESMPL KLPTFEEPSA SSGVQQVPEF EGGGRDSGSG MGITNSGTAV
301: EIPFPFCLLG QCFF
101: KHLLPRIVRR KKKRGEASCS SLVGGGEQHV VANIGEEVEE EEDDEGREAL LEEVRRLRQE QTAIGEQLAR MSRRLQATEL RSDQLMPLLA RLDEDPNATS
201: LHLLQQAAEK KLQRMQLPSR DFASFPIVPP LHPAPSPLLA LGDTAMGGAR VGQWAESMPL KLPTFEEPSA SSGVQQVPEF EGGGRDSGSG MGITNSGTAV
301: EIPFPFCLLG QCFF
001: MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
Arabidopsis Description
HSFA2Heat stress transcription factor A-2 [Source:UniProtKB/Swiss-Prot;Acc:O80982]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.