Factsheet for GSMUA_Achr3P31860_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P19330_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	GSMUA_Achr8P19330_001	AT1G19980.1	21798944
AT3G24520.1	GSMUA_AchrUn_...	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P15740_001	Banana	nucleus	46.91	55.07
TraesCS3A01G280800.1	Wheat	nucleus	34.88	47.88
TraesCS3D01G280600.1	Wheat	nucleus	35.19	47.3
TraesCS3B01G314600.1	Wheat	nucleus	33.02	47.14
Os01t0733200-01	Rice	nucleus	36.11	46.8
GSMUA_Achr7P24790_001	Banana	nucleus	29.32	45.45
Zm00001d043536_P001	Maize	nucleus	34.26	44.58
KXG33312	Sorghum	nucleus	34.88	43.46
GSMUA_Achr8P27820_001	Banana	nucleus	46.91	41.87
TraesCS3A01G229000.1	Wheat	nucleus	41.67	41.54
TraesCS3D01G227200.1	Wheat	nucleus	41.05	41.43
TraesCS3B01G425200.1	Wheat	nucleus	38.58	41.12
HORVU3Hr1G055960.1	Barley	nucleus	41.36	40.98
GSMUA_Achr3P06020_001	Banana	nucleus	19.14	40.79
Zm00001d044168_P001	Maize	nucleus	41.67	40.79
TraesCS3B01G255600.1	Wheat	nucleus	40.74	40.62
TraesCS3D01G385900.1	Wheat	nucleus	37.65	39.87
TraesCS3A01G393100.1	Wheat	nucleus	34.57	39.72
Os01t0625300-01	Rice	nucleus	41.36	39.53
TraesCS3D01G386000.1	Wheat	nucleus	38.27	39.49
TraesCS3A01G393200.1	Wheat	nucleus	37.96	39.17
HORVU3Hr1G088890.2	Barley	nucleus	34.88	39.1
EES01103	Sorghum	nucleus	41.67	36.99
Zm00001d011406_P001	Maize	nucleus	42.9	35.92
HORVU3Hr1G069590.4	Barley	nucleus, plastid	26.23	35.87
GSMUA_Achr4P30990_001	Banana	nucleus	31.79	35.64
KRH39283	Soybean	nucleus	34.26	34.69
Bra013253.1-P	Field mustard	nucleus	29.32	33.81
CDX93024	Canola	nucleus	31.48	33.33
Bra015050.1-P	Field mustard	nucleus	31.17	32.69
VIT_11s0016g03940.t01	Wine grape	nucleus	33.02	32.52
CDY50608	Canola	nucleus	31.48	32.38
CDX77420	Canola	nucleus	30.56	31.53
CDY39545	Canola	nucleus	30.56	31.53
GSMUA_Achr8P20520_001	Banana	nucleus	27.78	31.03
AT3G24520.1	Thale cress	nucleus	31.17	30.61
GSMUA_Achr6P24430_001	Banana	nucleus	28.7	30.19
GSMUA_Achr10P...	Banana	nucleus	28.4	30.16
CDY43158	Canola	nucleus	28.4	30.07
GSMUA_Achr2P16660_001	Banana	nucleus	25.0	29.67
GSMUA_Achr8P27750_001	Banana	nucleus	20.06	29.41
GSMUA_Achr5P03000_001	Banana	nucleus	29.94	29.04
Solyc12g007070.1.1	Tomato	nucleus	32.1	28.18
GSMUA_Achr6P00960_001	Banana	nucleus	27.16	28.11
PGSC0003DMT400001025	Potato	nucleus	31.17	27.45
GSMUA_Achr1P27200_001	Banana	nucleus	28.09	27.33
GSMUA_Achr2P21640_001	Banana	nucleus	27.16	26.51
GSMUA_Achr4P04500_001	Banana	nucleus	34.26	25.28
GSMUA_Achr3P27600_001	Banana	nucleus	31.48	23.94
GSMUA_Achr4P17040_001	Banana	nucleus	33.02	21.97
GSMUA_Achr8P28330_001	Banana	nucleus	21.6	21.41
GSMUA_Achr3P15640_001	Banana	nucleus	28.7	20.53
GSMUA_Achr9P01640_001	Banana	nucleus	24.07	20.47
GSMUA_Achr6P27750_001	Banana	nucleus	24.69	20.36
GSMUA_Achr6P31750_001	Banana	nucleus	28.7	19.14
GSMUA_Achr5P15900_001	Banana	nucleus	25.0	14.81
CDY43157	Canola	cytosol	0.62	2.22

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr3G31860_001	EnsemblPlants:GSMUA_Achr3P31860_001	EnsemblPlants:GSMUA_Achr3T31860_001	InterPro:HSF_DNA-bd	InterPro:HSF_fam
InterPro:IPR036388	UniProt:M0SJK0	PFAM:PF00447	PRINTS:PR00056	PANTHER:PTHR10015	PANTHER:PTHR10015:SF187
SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI00029582FD	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G31860_001]

Coordinates

chr3:-:29984181..29985244

Molecular Weight (calculated)

36590.5 Da

IEP (calculated)

6.183

GRAVY (calculated)

-0.400

Length

324 amino acids

Sequence
(BLAST)

001: MEGTSKDSIG YEAQAAAPFV EKTYAMVNDP RTDSLILWGK KNNSFLVLSP NEFSQFLLPY YFRHSNFSSF VRQLNTYGFR KVDPDRWEFA HQSFLRDQIH
101: LLPRIIRRTK RAHAGLFACS SSSSSSSEKE KGAMEGEVDE MLLQELFRLR QEQRALEEEL QVMSKRLKAT ERRPHQMMSF LAKMADDPRS LSRLVISKQQ
201: QQQQQSSTAA KKRRLIISPP PPPPAAATQL DDGLFLPSIL VPGIQQTMFE PLDHGSDQLI MEEVKPFALI TDVSAINSYD AELIGPNSAS EISFLPEFEL
301: SMTGSETAAA EANFPFSLLG HGFY

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.