Factsheet for HORVU3Hr1G055960.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G001310.16
HORVU3Hr1G051080.3
HORVU5Hr1G056920.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	HORVU2Hr1G001310.16	AT1G19980.1	21798944
AT3G24520.1	HORVU3Hr1G051080.3	AT3G01300.1	21798944
AT3G24520.1	HORVU5Hr1G056920.1	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G227200.1	Wheat	nucleus	91.74	93.46
TraesCS3B01G255600.1	Wheat	nucleus	92.66	93.23
TraesCS3A01G229000.1	Wheat	nucleus	92.05	92.62
HORVU3Hr1G088890.2	Barley	nucleus	72.78	82.35
Os01t0625300-01	Rice	nucleus	68.2	65.78
Zm00001d044168_P001	Maize	nucleus	65.44	64.65
EES01103	Sorghum	nucleus	67.58	60.55
Zm00001d011406_P001	Maize	nucleus	65.44	55.3
HORVU7Hr1G034320.1	Barley	nucleus, plastid	22.32	54.48
HORVU7Hr1G055320.1	Barley	mitochondrion, nucleus	26.3	53.09
GSMUA_Achr3P15740_001	Banana	nucleus	40.37	47.83
HORVU2Hr1G043030.1	Barley	nucleus	22.02	46.45
GSMUA_Achr7P24790_001	Banana	nucleus	27.52	43.06
GSMUA_Achr3P31860_001	Banana	nucleus	40.98	41.36
HORVU7Hr1G119990.1	Barley	nucleus	28.13	37.86
HORVU7Hr1G088920.3	Barley	nucleus	29.97	36.84
GSMUA_Achr8P27820_001	Banana	nucleus	38.84	34.99
HORVU4Hr1G090090.4	Barley	nucleus, plastid	31.5	34.68
HORVU3Hr1G069590.4	Barley	nucleus, plastid	23.24	32.07
HORVU4Hr1G090850.1	Barley	nucleus	32.72	31.85
CDX93024	Canola	nucleus	29.36	31.37
KRH39283	Soybean	nucleus	30.58	31.25
Bra015050.1-P	Field mustard	nucleus	29.36	31.07
VIT_11s0016g03940.t01	Wine grape	nucleus	31.19	31.0
Bra013253.1-P	Field mustard	nucleus	26.3	30.61
CDX77420	Canola	nucleus	29.36	30.57
CDY39545	Canola	nucleus	29.36	30.57
CDY50608	Canola	nucleus	29.36	30.48
CDY43158	Canola	nucleus	27.22	29.09
AT3G24520.1	Thale cress	nucleus	29.05	28.79
HORVU1Hr1G083420.2	Barley	nucleus	31.19	27.42
Solyc12g007070.1.1	Tomato	nucleus	30.28	26.83
HORVU4Hr1G073650.2	Barley	nucleus	28.13	26.74
PGSC0003DMT400001025	Potato	nucleus	29.97	26.63
HORVU5Hr1G094380.1	Barley	nucleus	29.66	26.15
HORVU7Hr1G087690.1	Barley	nucleus	27.83	24.93
HORVU2Hr1G014590.1	Barley	nucleus	30.28	23.68
HORVU1Hr1G081300.1	Barley	nucleus	26.3	19.95
HORVU3Hr1G071550.3	Barley	nucleus	25.99	19.68
HORVU5Hr1G105770.2	Barley	nucleus	30.89	19.39
HORVU6Hr1G017910.1	Barley	nucleus	26.91	19.26
HORVU0Hr1G008940.2	Barley	cytosol, nucleus	15.6	17.41
HORVU5Hr1G123770.1	Barley	nucleus	30.28	17.25
CDY43157	Canola	cytosol	0.92	3.33

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:HORVU3Hr1G055960	EnsemblPlants:HORVU3Hr1G055960.1	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388
UniProt:M0UJ86	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF187
SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002952648	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chrchr3H:+:418599616..418601291

Molecular Weight (calculated)

36060.9 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.357

Length

327 amino acids

Sequence
(BLAST)

001: MDSLHTELAL GLIGCGHGDF QTAPFVAKTY QMVCDPRTDA LVRWGKGNNS FLVPDVAGFS QLLLPCFFKH GNFSSFVRQL NTYGFRKVHP DRWEFAHESF
101: LRGQTHLLPR IVRRKKRGEA GVGASCSSAV GGAEQHQHVV ANMGDEVEEE EEEEESEALL EEVQRLRKEQ TAIGEQLAKM SRRLQATERR PDRLMSFLAR
201: LAEDPSATSL HLLEQAAEKK RQRMQFPSRD FTSLPIALPL QPAPSPPPPP LLALGDAAMG GVRVWQWAEP IPLKLTTFEQ PSASSGVQQV PEFESGRSGS
301: GSGMGLTDGG TAVETPFPFC LLGQCFF

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.