Factsheet for TraesCS3A01G229000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G373900.2
TraesCS1A01G374100.1
TraesCS1B01G393900.3
TraesCS1B01G394200.1
TraesCS1D01G380600.1
TraesCS1D01G380700.1
TraesCS2A01G007200.1
TraesCS2B01G013500.2
TraesCS2D01G008300.2
TraesCS3A01G210700.1
TraesCS3B01G241300.1
TraesCS3D01G213600.1
TraesCS5A01G193300.2
TraesCS5B01G188700.1
TraesCS5D01G195800.2
TraesCS6A01G051100.1
TraesCS6B01G067600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	TraesCS1A01G373900.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS1A01G374100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G393900.3	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G394200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380700.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2A01G007200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2B01G013500.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS2D01G008300.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS6A01G051100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS6B01G067600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS3A01G210700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3B01G241300.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3D01G213600.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5A01G193300.2	AT3G01300.1	21798944
AT3G24520.1	TraesCS5B01G188700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5D01G195800.2	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G227200.1	Wheat	nucleus	95.08	96.26
TraesCS3B01G255600.1	Wheat	nucleus	95.69	95.69
HORVU3Hr1G055960.1	Barley	nucleus	92.62	92.05
TraesCS3A01G393100.1	Wheat	nucleus	73.85	85.11
TraesCS3A01G393200.1	Wheat	nucleus	82.15	85.03
Os01t0625300-01	Rice	nucleus	69.54	66.67
Zm00001d044168_P001	Maize	nucleus	65.85	64.65
EES01103	Sorghum	nucleus	68.0	60.55
Zm00001d011406_P001	Maize	nucleus	65.23	54.78
GSMUA_Achr3P15740_001	Banana	nucleus	40.92	48.19
TraesCS3A01G280800.1	Wheat	nucleus	32.92	45.34
GSMUA_Achr7P24790_001	Banana	nucleus	27.69	43.06
GSMUA_Achr3P31860_001	Banana	nucleus	41.54	41.67
TraesCS5A01G548700.1	Wheat	nucleus	32.0	37.96
TraesCS5A01G550700.1	Wheat	nucleus	31.38	37.36
TraesCS7A01G355300.1	Wheat	nucleus	29.85	36.47
TraesCS5A01G524000.1	Wheat	nucleus	28.92	35.88
GSMUA_Achr8P27820_001	Banana	nucleus	39.69	35.54
KRH39283	Soybean	nucleus	31.38	31.88
CDX93024	Canola	nucleus	29.85	31.7
Bra015050.1-P	Field mustard	nucleus	29.85	31.39
VIT_11s0016g03940.t01	Wine grape	nucleus	31.38	31.0
Bra013253.1-P	Field mustard	nucleus	26.77	30.96
CDX77420	Canola	nucleus	29.85	30.89
CDY39545	Canola	nucleus	29.85	30.89
CDY50608	Canola	nucleus	29.85	30.79
TraesCS5A01G437900.1	Wheat	nucleus	31.38	29.48
AT3G24520.1	Thale cress	nucleus	29.85	29.39
CDY43158	Canola	nucleus	27.38	29.09
Solyc12g007070.1.1	Tomato	nucleus	30.46	26.83
TraesCS4A01G027700.1	Wheat	nucleus	28.0	26.69
TraesCS1A01G375600.2	Wheat	nucleus	30.15	26.63
PGSC0003DMT400001025	Potato	nucleus	30.15	26.63
TraesCS5A01G383800.1	Wheat	nucleus	29.54	25.81
TraesCS7A01G360400.1	Wheat	nucleus	26.77	24.3
TraesCS3A01G405200.1	Wheat	nucleus	29.23	23.93
TraesCS2A01G089300.1	Wheat	nucleus	30.15	23.73
TraesCS4A01G062800.1	Wheat	nucleus	24.62	20.89
TraesCS3A01G289200.1	Wheat	nucleus	26.15	19.68
TraesCS4A01G322300.1	Wheat	nucleus	31.08	19.39
TraesCS6A01G098800.1	Wheat	nucleus	27.08	19.21
TraesCS1A01G350400.2	Wheat	nucleus	25.54	18.74
TraesCS2A01G204500.1	Wheat	nucleus	27.69	18.04
CDY43157	Canola	cytosol	0.92	3.33

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF187	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS3A01G229000
EnsemblPlants:TraesCS3A01G229000.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:-:428569125..428570290

Molecular Weight (calculated)

35813.7 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.388

Length

325 amino acids

Sequence
(BLAST)

001: MDGLHTELAL GLIGCGHGDL QTAPFVAKTY QMVCDPRTDA LVRWGKGNNS FLVTDVAGFS QLLLPCFFKH GNFSSFVRQL NTYGFRKVHP DRWEFAHESF
101: LRGQTHLLPR IVRRKKRGEA GAGASCSSAV GGGEQHQHVV ANMGDQVEEE EDEEGREALL EEVQRLRQEQ TAIGEQLAKM SRRLQATERR PDRLMSFLSK
201: LAEDPNATSL HLLEQAAEKK RQRMQCPSRD FTSFPVALPL HPAPSPPPPP LLALGDPTMG GVRVWQWAEP MPLALTTFEQ PSASSGVQQV PEFEGGRSGS
301: SMGITDGGTA VETPFPFCLL GQCFF

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.