Factsheet for GSMUA_Achr3P15740_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P19330_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	GSMUA_Achr8P19330_001	AT1G19980.1	21798944
AT3G24520.1	GSMUA_AchrUn_...	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P27820_001	Banana	nucleus	66.67	50.69
GSMUA_Achr3P31860_001	Banana	nucleus	55.07	46.91
TraesCS3B01G314600.1	Wheat	nucleus	38.04	46.26
TraesCS3A01G280800.1	Wheat	nucleus	39.13	45.76
TraesCS3D01G280600.1	Wheat	nucleus	39.49	45.23
GSMUA_Achr7P24790_001	Banana	nucleus	33.33	44.02
Os01t0733200-01	Rice	nucleus	39.86	44.0
Zm00001d043536_P001	Maize	nucleus	39.49	43.78
KXG33312	Sorghum	nucleus	39.86	42.31
TraesCS3A01G393100.1	Wheat	nucleus	42.75	41.84
TraesCS3D01G227200.1	Wheat	nucleus	48.55	41.74
TraesCS3A01G229000.1	Wheat	nucleus	48.19	40.92
HORVU3Hr1G088890.2	Barley	nucleus	42.75	40.83
Zm00001d044168_P001	Maize	nucleus	48.55	40.48
TraesCS3B01G425200.1	Wheat	nucleus	44.57	40.46
HORVU3Hr1G055960.1	Barley	nucleus	47.83	40.37
TraesCS3B01G255600.1	Wheat	nucleus	47.46	40.31
TraesCS3D01G385900.1	Wheat	nucleus	44.57	40.2
TraesCS3A01G393200.1	Wheat	nucleus	44.93	39.49
GSMUA_Achr3P06020_001	Banana	nucleus	21.74	39.47
TraesCS3D01G386000.1	Wheat	nucleus	44.57	39.17
Os01t0625300-01	Rice	nucleus	47.83	38.94
EES01103	Sorghum	nucleus	48.19	36.44
GSMUA_Achr4P30990_001	Banana	nucleus	38.04	36.33
Zm00001d011406_P001	Maize	nucleus	48.19	34.37
CDX93024	Canola	nucleus	36.96	33.33
Bra015050.1-P	Field mustard	nucleus	36.96	33.01
KRH39283	Soybean	nucleus	38.04	32.81
CDY39545	Canola	nucleus	37.32	32.8
CDX77420	Canola	nucleus	37.32	32.8
Bra013253.1-P	Field mustard	nucleus	33.33	32.74
VIT_11s0016g03940.t01	Wine grape	nucleus	38.41	32.22
GSMUA_Achr10P...	Banana	nucleus	35.51	32.13
CDY50608	Canola	nucleus	36.23	31.75
HORVU3Hr1G069590.4	Barley	nucleus, plastid	27.17	31.65
AT3G24520.1	Thale cress	nucleus	37.68	31.52
GSMUA_Achr8P20520_001	Banana	nucleus	32.61	31.03
GSMUA_Achr2P16660_001	Banana	nucleus	29.71	30.04
GSMUA_Achr6P24430_001	Banana	nucleus	31.88	28.57
GSMUA_Achr5P03000_001	Banana	nucleus	34.42	28.44
GSMUA_Achr8P27750_001	Banana	nucleus	22.46	28.05
CDY43158	Canola	nucleus	30.8	27.78
GSMUA_Achr6P00960_001	Banana	nucleus	30.8	27.16
Solyc12g007070.1.1	Tomato	nucleus	36.23	27.1
PGSC0003DMT400001025	Potato	nucleus	35.87	26.9
GSMUA_Achr1P27200_001	Banana	nucleus	32.25	26.73
GSMUA_Achr2P21640_001	Banana	nucleus	31.16	25.9
GSMUA_Achr4P04500_001	Banana	nucleus	35.51	22.32
GSMUA_Achr3P27600_001	Banana	nucleus	33.33	21.6
GSMUA_Achr9P01640_001	Banana	nucleus	29.71	21.52
GSMUA_Achr6P27750_001	Banana	nucleus	30.07	21.12
GSMUA_Achr8P28330_001	Banana	nucleus	24.64	20.8
GSMUA_Achr4P17040_001	Banana	nucleus	33.7	19.1
GSMUA_Achr3P15640_001	Banana	nucleus	30.07	18.32
GSMUA_Achr6P31750_001	Banana	nucleus	30.8	17.49
GSMUA_Achr5P15900_001	Banana	nucleus	27.9	14.08
CDY43157	Canola	cytosol	0.72	2.22

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr3G15740_001	EnsemblPlants:GSMUA_Achr3P15740_001	EnsemblPlants:GSMUA_Achr3T15740_001	InterPro:HSF_DNA-bd	InterPro:HSF_fam
InterPro:IPR036388	UniProt:M0SEZ0	PFAM:PF00447	PRINTS:PR00056	PANTHER:PTHR10015	PANTHER:PTHR10015:SF187
SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002947FCB	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

Putative HSF-type DNA-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G15740_001]

Coordinates

chr3:-:16770642..16771558

Molecular Weight (calculated)

31595.6 Da

IEP (calculated)

10.460

GRAVY (calculated)

-0.648

Length

276 amino acids

Sequence
(BLAST)

001: MEEKSRGCHD YQEPVAPFVA KTYQMVSDQR LDSLIRWGNQ NNSFLVVDPN DFSQLLLPSF FKHRNFSTFI RQLNTYGFRK VDPDRWEFAH ESFLRGQAHL
101: LPSITRRRRK TQGVLHGSSS RGRGGVDGEE ERLLLQELEK LQQQQRSLEE EVKAMSKRVQ ATERRPRQLM SFLVKVAEDP KLLLQRLVRS KQQQQLSTEK
201: KRRVFASPAT TLLPFDEVSA MLKPSRTEPK PLEVGGFDLS ARQTSSQPEF GLSGTSSGTA SSTVAFPFTL LDQGFF

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.