Factsheet for Os01t0625300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0588500-01
Os04t0117200-01
Os09t0361100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	Os04t0117200-01	AT1G19980.1	21798944
AT3G24520.1	Os01t0588500-01	AT3G01300.1	21798944
AT3G24520.1	Os09t0361100-01	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G227200.1	Wheat	nucleus	66.67	70.41
TraesCS3A01G229000.1	Wheat	nucleus	66.67	69.54
TraesCS3B01G255600.1	Wheat	nucleus	66.37	69.23
Zm00001d044168_P001	Maize	nucleus	66.67	68.28
HORVU3Hr1G055960.1	Barley	nucleus	65.78	68.2
TraesCS3D01G386000.1	Wheat	nucleus	62.54	67.52
TraesCS3A01G393200.1	Wheat	nucleus	62.54	67.52
TraesCS3A01G393100.1	Wheat	nucleus	56.05	67.38
HORVU3Hr1G088890.2	Barley	nucleus	56.93	66.78
TraesCS3B01G425200.1	Wheat	nucleus	59.59	66.45
EES01103	Sorghum	nucleus	71.39	66.3
TraesCS3D01G385900.1	Wheat	nucleus	59.59	66.01
Zm00001d011406_P001	Maize	nucleus	66.67	58.4
Os01t0733200-01	Rice	nucleus	35.4	48.0
GSMUA_Achr3P15740_001	Banana	nucleus	38.94	47.83
GSMUA_Achr7P24790_001	Banana	nucleus	27.14	44.02
GSMUA_Achr3P31860_001	Banana	nucleus	39.53	41.36
Os02t0232000-01	Rice	nucleus	33.63	38.26
GSMUA_Achr8P27820_001	Banana	nucleus	38.35	35.81
Bra015050.1-P	Field mustard	nucleus	30.38	33.33
CDX93024	Canola	nucleus	30.09	33.33
Bra013253.1-P	Field mustard	nucleus	27.43	33.1
KRH39283	Soybean	nucleus	30.97	32.81
CDY50608	Canola	nucleus	30.09	32.38
CDX77420	Canola	nucleus	29.79	32.17
CDY39545	Canola	nucleus	29.79	32.17
VIT_11s0016g03940.t01	Wine grape	nucleus	30.68	31.61
AT3G24520.1	Thale cress	nucleus	28.91	29.7
CDY43158	Canola	nucleus	26.55	29.41
Os10t0419300-00	Rice	nucleus	30.97	29.33
Os07t0178600-01	Rice	nucleus	31.56	28.76
Os06t0565200-00	Rice	nucleus	28.02	28.7
PGSC0003DMT400001025	Potato	nucleus	30.38	27.99
Solyc12g007070.1.1	Tomato	nucleus	30.09	27.64
Os03t0161900-02	Rice	nucleus	28.32	25.33
Os01t0571300-01	Rice	mitochondrion, nucleus	27.14	22.89
Os03t0854500-01	Rice	nucleus	31.27	20.95
Os02t0527300-01	Rice	nucleus	30.38	20.68
Os05t0530400-01	Rice	nucleus	27.43	20.26
Os03t0224700-01	Rice	nucleus	24.19	20.0
Os01t0749300-02	Rice	nucleus	25.66	19.77
Os02t0496100-01	Rice	nucleus	26.84	19.16
CDY43157	Canola	cytosol	0.88	3.33

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:4326685	EMBL:AK069479	EMBL:AY344495	ProteinID:BAD61149.1
ProteinID:BAF05537.1	ProteinID:BAS73249.1	ProteinID:EEE55016.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	EnsemblPlantsGene:Os01g0625300
EnsemblPlants:Os01t0625300-01	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF187
UniProt:Q6VBA4	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI000045048C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
RefSeq:XP_015636084.1	SEG:seg	:	:	:	:

Description

HEAT STRESS TRANSCRIPTION FACTOR C1ASimilar to Heat shock transcription factor 31 (Fragment). (Os01t0625300-01)

Coordinates

chr1:+:24967398..24969047

Molecular Weight (calculated)

36864.8 Da

IEP (calculated)

6.691

GRAVY (calculated)

-0.376

Length

339 amino acids

Sequence
(BLAST)

001: MDGLHTELAL GLIGCCGGDG QQQTAPFVAK TYQMVCDPRT DALVRWGRDN NSFVVVDPAA FSQLLLPCFF KHGNFSSFVR QLNTYGFRKV HPDRWEFAHE
101: SFLRGQTHLL PRIVRRKKRG EGGGGGGGAS CSFGGGAGEH QVAAAAASVG MSGEEEDAAE DVLAKEAALF EEVQRLRHEQ TAIGEELARM SQRLQATERR
201: PDQLMSFLAK LADDPNAVTG HLLEQAAERK RRRQHLPSHE PTVCPLPPAP PPQPPQPLLA LAGAAAMDGT YWWTTEHHHH HHHQMKPMTV LPSLEPPTAS
301: CGVHQVPELG GGGVMGLTTD GEAKVEPPFP FCLLGQAFF

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.