Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P19330_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24520.1 | GSMUA_Achr8P19330_001 | AT1G19980.1 | 21798944 |
| AT3G24520.1 | GSMUA_AchrUn_... | AT3G01300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P06020_001 | Banana | nucleus | 31.58 | 43.42 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 44.02 | 33.33 |
| TraesCS3B01G314600.1 | Wheat | nucleus | 34.93 | 32.16 |
| TraesCS3D01G280600.1 | Wheat | nucleus | 36.84 | 31.95 |
| TraesCS3A01G280800.1 | Wheat | nucleus | 35.89 | 31.78 |
| Os01t0733200-01 | Rice | nucleus | 37.32 | 31.2 |
| Zm00001d043536_P001 | Maize | nucleus | 36.84 | 30.92 |
| KXG33312 | Sorghum | nucleus | 37.8 | 30.38 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 45.45 | 29.32 |
| TraesCS3D01G227200.1 | Wheat | nucleus | 43.54 | 28.35 |
| TraesCS3A01G393100.1 | Wheat | nucleus | 37.8 | 28.01 |
| TraesCS3B01G425200.1 | Wheat | nucleus | 40.67 | 27.96 |
| TraesCS3D01G385900.1 | Wheat | nucleus | 40.67 | 27.78 |
| TraesCS3A01G229000.1 | Wheat | nucleus | 43.06 | 27.69 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 38.28 | 27.68 |
| HORVU3Hr1G088890.2 | Barley | nucleus | 38.28 | 27.68 |
| HORVU3Hr1G055960.1 | Barley | nucleus | 43.06 | 27.52 |
| TraesCS3B01G255600.1 | Wheat | nucleus | 42.58 | 27.38 |
| Os01t0625300-01 | Rice | nucleus | 44.02 | 27.14 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 46.89 | 27.0 |
| Zm00001d044168_P001 | Maize | nucleus | 42.58 | 26.89 |
| TraesCS3A01G393200.1 | Wheat | nucleus | 40.19 | 26.75 |
| GSMUA_Achr8P27750_001 | Banana | nucleus | 27.75 | 26.24 |
| TraesCS3D01G386000.1 | Wheat | nucleus | 39.23 | 26.11 |
| EES01103 | Sorghum | nucleus | 44.02 | 25.21 |
| Bra015050.1-P | Field mustard | nucleus | 35.41 | 23.95 |
| CDX93024 | Canola | nucleus | 34.93 | 23.86 |
| Bra013253.1-P | Field mustard | nucleus | 32.06 | 23.84 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 33.01 | 23.79 |
| CDX77420 | Canola | nucleus | 35.41 | 23.57 |
| CDY39545 | Canola | nucleus | 35.41 | 23.57 |
| Zm00001d011406_P001 | Maize | nucleus | 43.54 | 23.51 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 36.84 | 23.4 |
| CDY50608 | Canola | nucleus | 34.93 | 23.17 |
| KRH39283 | Soybean | nucleus | 35.41 | 23.12 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 33.49 | 22.73 |
| GSMUA_Achr6P00960_001 | Banana | nucleus | 33.97 | 22.68 |
| GSMUA_Achr10P... | Banana | nucleus | 33.01 | 22.62 |
| GSMUA_Achr2P16660_001 | Banana | nucleus | 29.19 | 22.34 |
| GSMUA_Achr2P21640_001 | Banana | nucleus | 35.41 | 22.29 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 35.41 | 22.16 |
| AT3G24520.1 | Thale cress | nucleus | 34.93 | 22.12 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 33.97 | 21.32 |
| CDY43158 | Canola | nucleus | 31.1 | 21.24 |
| PGSC0003DMT400001025 | Potato | nucleus | 36.84 | 20.92 |
| Solyc12g007070.1.1 | Tomato | nucleus | 36.84 | 20.87 |
| HORVU3Hr1G069590.4 | Barley | nucleus, plastid | 22.49 | 19.83 |
| GSMUA_Achr9P01640_001 | Banana | nucleus | 33.01 | 18.11 |
| GSMUA_Achr8P28330_001 | Banana | nucleus | 28.23 | 18.04 |
| GSMUA_Achr3P27600_001 | Banana | nucleus | 36.36 | 17.84 |
| GSMUA_Achr4P04500_001 | Banana | nucleus | 36.84 | 17.54 |
| GSMUA_Achr6P27750_001 | Banana | nucleus | 31.58 | 16.79 |
| GSMUA_Achr4P17040_001 | Banana | nucleus | 36.36 | 15.61 |
| GSMUA_Achr3P15640_001 | Banana | nucleus | 33.49 | 15.45 |
| GSMUA_Achr6P31750_001 | Banana | nucleus | 34.45 | 14.81 |
| GSMUA_Achr5P15900_001 | Banana | nucleus | 25.84 | 9.87 |
| CDY43157 | Canola | cytosol | 2.39 | 5.56 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSMUA_Achr7G24790_001 | EnsemblPlants:GSMUA_Achr7P24790_001 | EnsemblPlants:GSMUA_Achr7T24790_001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 |
| UniProt:M0TKG5 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF187 |
| SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI000295D23D | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G24790_001]
Coordinates
chr7:+:26647113..26648366
Molecular Weight (calculated)
23898.6 Da
IEP (calculated)
10.184
GRAVY (calculated)
-0.260
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEIRNTSVG YQVQASPFVA KTYEMVNDPR TDCLIRWGKG NNSFVVVNPS DFSQFLLPSY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAH HLFLRGQIHL
101: LPHVIRRSKK SHVGLCAGSS SSSITRRVRV QKQQRQPPSP SLYSATDSAS LYELKVYCQT SSCFCILGRY CSFLIANLLS SPLSSKIVYF IDINFKNLQT
201: AKSLSMTRT
101: LPHVIRRSKK SHVGLCAGSS SSSITRRVRV QKQQRQPPSP SLYSATDSAS LYELKVYCQT SSCFCILGRY CSFLIANLLS SPLSSKIVYF IDINFKNLQT
201: AKSLSMTRT
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.