Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P16660_001 | |
| GSMUA_Achr6P00960_001 | |
| GSMUA_Achr8P19130_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26150.1 | GSMUA_Achr2P16660_001 | AT2G26150.1 | 21510947 |
| AT2G26150.1 | GSMUA_Achr6P00960_001 | AT2G26150.1 | 21510947 |
| AT2G26150.1 | GSMUA_Achr8P19130_001 | AT5G52640.1 | 19366428 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P00960_001 | Banana | nucleus | 72.16 | 62.94 |
| GSMUA_Achr3P06020_001 | Banana | nucleus | 23.08 | 41.45 |
| PGSC0003DMT400021234 | Potato | nucleus | 53.48 | 41.36 |
| CDY21503 | Canola | nucleus | 51.28 | 40.11 |
| VIT_04s0008g01110.t01 | Wine grape | nucleus | 56.78 | 39.95 |
| Bra000557.1-P | Field mustard | nucleus | 50.92 | 39.94 |
| AT2G26150.1 | Thale cress | nucleus | 50.18 | 39.71 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 41.76 | 39.31 |
| KRH05436 | Soybean | nucleus | 50.92 | 39.15 |
| KRH61515 | Soybean | nucleus | 52.01 | 38.17 |
| Os06t0565200-00 | Rice | nucleus | 46.15 | 38.07 |
| KRH15573 | Soybean | nucleus | 49.82 | 37.36 |
| CDX83217 | Canola | nucleus | 50.92 | 37.27 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 41.76 | 37.01 |
| TraesCS7B01G267300.1 | Wheat | nucleus | 45.42 | 35.13 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 42.49 | 34.83 |
| TraesCS7A01G360400.1 | Wheat | nucleus | 44.32 | 33.8 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 41.03 | 33.53 |
| HORVU7Hr1G087690.1 | Barley | nucleus | 44.32 | 33.15 |
| Zm00001d046204_P001 | Maize | nucleus | 44.32 | 33.15 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 30.04 | 29.71 |
| GSMUA_Achr7P24790_001 | Banana | nucleus | 22.34 | 29.19 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 30.4 | 28.72 |
| GSMUA_Achr8P27750_001 | Banana | nucleus | 23.08 | 28.51 |
| GSMUA_Achr2P21640_001 | Banana | nucleus | 34.43 | 28.31 |
| KXG20211 | Sorghum | nucleus | 42.86 | 28.06 |
| Os01t0571300-01 | Rice | mitochondrion, nucleus | 39.93 | 27.11 |
| GSMUA_Achr4P04500_001 | Banana | nucleus | 43.59 | 27.11 |
| EES00942 | Sorghum | plastid | 38.46 | 26.65 |
| GSMUA_Achr8P28330_001 | Banana | nucleus | 31.5 | 26.3 |
| GSMUA_Achr3P27600_001 | Banana | nucleus | 40.66 | 26.06 |
| GSMUA_Achr10P... | Banana | nucleus | 28.94 | 25.9 |
| GSMUA_Achr9P01640_001 | Banana | nucleus | 35.16 | 25.2 |
| GSMUA_Achr4P17040_001 | Banana | nucleus | 44.69 | 25.05 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 29.67 | 25.0 |
| GSMUA_Achr6P27750_001 | Banana | nucleus | 34.8 | 24.17 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 31.87 | 23.97 |
| Zm00001d044259_P001 | Maize | plastid | 31.87 | 23.08 |
| GSMUA_Achr3P15640_001 | Banana | nucleus | 33.7 | 20.31 |
| GSMUA_Achr6P31750_001 | Banana | nucleus | 34.8 | 19.55 |
| GSMUA_Achr5P15900_001 | Banana | nucleus | 33.7 | 16.82 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr2G16660_001 | EnsemblPlants:GSMUA_Achr2P16660_001 | EnsemblPlants:GSMUA_Achr2T16660_001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam |
| InterPro:IPR036388 | UniProt:M0S8K7 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 |
| PANTHER:PTHR10015:SF186 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI000295C25D | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
Putative Heat shock factor protein HSF30 [Source:GMGC_GENE;Acc:GSMUA_Achr2G16660_001]
Coordinates
chr2:+:17459604..17460808
Molecular Weight (calculated)
31588.3 Da
IEP (calculated)
5.554
GRAVY (calculated)
-0.814
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEDAETDAV VSWSGARNSF IVWDSHRFAT ALLPKYFKHS NFSSFIRQLN TYGFRKVDPN RWEFANADFL AGQKHLLKNI KRRRNTEVDR MRRDRNVLML
101: EIVKLRQRQQ SSRAQLLEMQ RRMQVTERRQ QQTMSFLGRA LRNPAFVRQL ALRGEQQRQL NSAGKKRRLP ATPSSEDLPA IEDLLLSTMD DDEGSSSDIG
201: QRDESTVEQG ASVTNDLTWE ELLNESKLMG GETEDDEQSE VEVEVEALAA EQLEWGEDMK DLVKQMGYMK SKP
101: EIVKLRQRQQ SSRAQLLEMQ RRMQVTERRQ QQTMSFLGRA LRNPAFVRQL ALRGEQQRQL NSAGKKRRLP ATPSSEDLPA IEDLLLSTMD DDEGSSSDIG
201: QRDESTVEQG ASVTNDLTWE ELLNESKLMG GETEDDEQSE VEVEVEALAA EQLEWGEDMK DLVKQMGYMK SKP
001: MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
Arabidopsis Description
HSFA2Heat stress transcription factor A-2 [Source:UniProtKB/Swiss-Prot;Acc:O80982]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.