Factsheet for Zm00001d044168_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005647_P002
Zm00001d020213_P003
Zm00001d039489_P002
Zm00001d044324_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	Zm00001d039489_P002	AT1G19980.1	21798944
AT3G24520.1	Zm00001d005647_P002	AT3G01300.1	21798944
AT3G24520.1	Zm00001d020213_P003	AT3G01300.1	21798944
AT3G24520.1	Zm00001d044324_P001	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01103	Sorghum	nucleus	83.99	76.16
Zm00001d011406_P001	Maize	nucleus	80.97	69.25
Os01t0625300-01	Rice	nucleus	68.28	66.67
TraesCS3B01G255600.1	Wheat	nucleus	65.26	66.46
TraesCS3D01G227200.1	Wheat	nucleus	64.35	66.36
TraesCS3A01G393200.1	Wheat	nucleus	62.84	66.24
TraesCS3B01G425200.1	Wheat	nucleus	60.73	66.12
TraesCS3A01G229000.1	Wheat	nucleus	64.65	65.85
HORVU3Hr1G055960.1	Barley	nucleus	64.65	65.44
TraesCS3A01G393100.1	Wheat	nucleus	54.98	64.54
TraesCS3D01G386000.1	Wheat	nucleus	61.03	64.33
TraesCS3D01G385900.1	Wheat	nucleus	59.21	64.05
HORVU3Hr1G088890.2	Barley	nucleus	54.68	62.63
GSMUA_Achr3P15740_001	Banana	nucleus	40.48	48.55
Zm00001d043536_P001	Maize	nucleus	33.53	44.58
Zm00001d016255_P001	Maize	nucleus	34.44	44.36
GSMUA_Achr7P24790_001	Banana	nucleus	26.89	42.58
GSMUA_Achr3P31860_001	Banana	nucleus	40.79	41.67
Zm00001d046299_P001	Maize	nucleus	32.33	40.07
GSMUA_Achr8P27820_001	Banana	nucleus	39.88	36.36
CDX93024	Canola	nucleus	29.91	32.35
KRH39283	Soybean	nucleus	31.12	32.19
Bra013253.1-P	Field mustard	nucleus	27.19	32.03
VIT_11s0016g03940.t01	Wine grape	nucleus	31.42	31.61
CDY50608	Canola	nucleus	29.91	31.43
Bra015050.1-P	Field mustard	nucleus	29.31	31.39
CDY39545	Canola	nucleus	29.31	30.89
CDX77420	Canola	nucleus	29.31	30.89
CDY43158	Canola	nucleus	27.19	29.41
AT3G24520.1	Thale cress	nucleus	29.31	29.39
Zm00001d032923_P002	Maize	nucleus	30.21	28.01
Zm00001d018941_P001	Maize	nucleus	31.72	28.0
Solyc12g007070.1.1	Tomato	nucleus	29.91	26.83
PGSC0003DMT400001025	Potato	nucleus	29.31	26.36
Zm00001d027757_P001	Maize	nucleus	29.91	25.78
Zm00001d046204_P001	Maize	nucleus	28.4	25.75
Zm00001d033987_P001	Maize	nucleus	27.49	24.53
Zm00001d016674_P001	Maize	nucleus	31.42	20.47
Zm00001d012749_P001	Maize	nucleus	26.59	20.32
Zm00001d010812_P001	Maize	nucleus	27.19	20.04
Zm00001d034886_P001	Maize	nucleus	31.72	19.92
Zm00001d038746_P001	Maize	nucleus	27.79	19.62
Zm00001d012823_P001	Maize	nucleus	31.42	18.7
Zm00001d044259_P001	Maize	plastid	21.15	18.57
Zm00001d016520_P001	Maize	nucleus	29.0	18.18
Zm00001d048041_P004	Maize	nucleus	24.17	17.7
Zm00001d034433_P003	Maize	nucleus	31.12	16.59
CDY43157	Canola	cytosol	0.91	3.33

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:103651471	MapMan:15.5.13	UniProt:A0A1D6NI85	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388
ProteinID:ONM40079.1	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF187
SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002221073	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d044168
EnsemblPlants:Zm00001d044168_P001	EnsemblPlants:Zm00001d044168_T001	SEG:seg	:	:	:

Description

HSF-transcription factor 23Heat stress transcription factor C-1

Coordinates

chr3:-:220964949..220966074

Molecular Weight (calculated)

35885.7 Da

IEP (calculated)

6.311

GRAVY (calculated)

-0.345

Length

331 amino acids

Sequence
(BLAST)

001: MDGLHTELAL GLLECGVVGS GGETAPFVAK TYQMVCDSRT DALVRWGRGN NSFVVADPAG FSRLLLPCFF KHSNFSSFVR QLNTYGFRKV HPDRWEFAHE
101: SFLRGQTHLL PRIVRRKKRG GGGGACSSGG DAPQAGCCIS TMGEDHRPEA DPDEKQEADA EAALLEEVQR LRQEQTAIGE ELAQMSRRLQ ATERRPDQLM
201: SFLDRLAEDP DGVTRNLVEQ AAEKKRRRMQ LASQSQPARP PLPPAPPPPV LHPLLALGGA AAKGLDGWQW AELQKPSVVL PAFDFDPAAS CCGAQHAPNL
301: GGAGIIGMGL TADETTVETP FPFCLLGQGF F

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.