Factsheet for TraesCS3D01G385900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G373900.2
TraesCS1A01G374100.1
TraesCS1B01G393900.3
TraesCS1B01G394200.1
TraesCS1D01G380600.1
TraesCS1D01G380700.1
TraesCS2A01G007200.1
TraesCS2B01G013500.2
TraesCS2D01G008300.2
TraesCS3A01G210700.1
TraesCS3B01G241300.1
TraesCS3D01G213600.1
TraesCS5A01G193300.2
TraesCS5B01G188700.1
TraesCS5D01G195800.2
TraesCS6A01G051100.1
TraesCS6B01G067600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	TraesCS1A01G373900.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS1A01G374100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G393900.3	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G394200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380700.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2A01G007200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2B01G013500.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS2D01G008300.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS6A01G051100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS6B01G067600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS3A01G210700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3B01G241300.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3D01G213600.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5A01G193300.2	AT3G01300.1	21798944
AT3G24520.1	TraesCS5B01G188700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5D01G195800.2	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G425200.1	Wheat	nucleus	90.85	91.45
TraesCS3A01G393100.1	Wheat	nucleus	82.03	89.01
TraesCS3D01G386000.1	Wheat	nucleus	88.24	85.99
HORVU3Hr1G088890.2	Barley	nucleus	75.82	80.28
TraesCS3D01G227200.1	Wheat	nucleus	83.99	80.06
Os01t0625300-01	Rice	nucleus	66.01	59.59
Zm00001d044168_P001	Maize	nucleus	64.05	59.21
EES01103	Sorghum	nucleus	66.99	56.16
Zm00001d011406_P001	Maize	nucleus	65.03	51.42
GSMUA_Achr3P15740_001	Banana	nucleus	40.2	44.57
TraesCS3D01G280600.1	Wheat	nucleus	32.68	41.49
GSMUA_Achr7P24790_001	Banana	nucleus	27.78	40.67
GSMUA_Achr3P31860_001	Banana	nucleus	39.87	37.65
TraesCS4D01G358900.1	Wheat	nucleus	33.66	37.32
TraesCS7D01G367700.1	Wheat	nucleus	30.07	34.72
GSMUA_Achr8P27820_001	Banana	nucleus	37.91	31.96
VIT_11s0016g03940.t01	Wine grape	nucleus	32.68	30.4
CDX93024	Canola	nucleus	30.39	30.39
KRH39283	Soybean	nucleus	31.7	30.31
Bra015050.1-P	Field mustard	nucleus	30.39	30.1
CDY39545	Canola	nucleus	30.39	29.62
CDX77420	Canola	nucleus	30.39	29.62
Bra013253.1-P	Field mustard	nucleus	27.12	29.54
CDY50608	Canola	nucleus	30.39	29.52
TraesCS4D01G276500.1	Wheat	nucleus	31.37	28.15
AT3G24520.1	Thale cress	nucleus	30.07	27.88
TraesCS5D01G445100.1	Wheat	nucleus	31.7	27.87
TraesCS1D01G382900.1	Wheat	nucleus	33.01	27.75
CDY43158	Canola	nucleus	27.45	27.45
Solyc12g007070.1.1	Tomato	nucleus	31.37	26.02
PGSC0003DMT400001025	Potato	nucleus	31.05	25.82
TraesCS5D01G393200.1	Wheat	nucleus	31.37	25.46
TraesCS2D01G087400.1	Wheat	nucleus	31.05	23.06
TraesCS4D01G239600.1	Wheat	nucleus	26.47	21.09
TraesCS5D01G553300.1	Wheat	nucleus	31.7	18.58
TraesCS2D01G211400.1	Wheat	nucleus	30.07	18.44
TraesCS6D01G083800.1	Wheat	nucleus	26.8	17.9
TraesCS3D01G289000.1	Wheat	nucleus	23.86	17.55
CDY43157	Canola	cytosol	0.98	3.33

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF187	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS3D01G385900
EnsemblPlants:TraesCS3D01G385900.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:+:501331412..501332620

Molecular Weight (calculated)

34158.6 Da

IEP (calculated)

6.318

GRAVY (calculated)

-0.401

Length

306 amino acids

Sequence
(BLAST)

001: MDGLHTELAL GLTGELQTAP FVAKTYQLVS DPRTDALVRW GRDNNSFLVT DVAGFSQLLL PCFFKHGNFS SFVRQLNSYG FRKVHPDRWE FAHESFLRGQ
101: THLLPRIVRR KKRGEASCSA LVGSGEQHVM ANIGAEVEEE EDDEGREALL EEVRRLRQEQ TAIGEQLAQM ARRLQATERR SDRLMPLLAR LDEDPRATSL
201: HLLQQAAEKK RQHTQLRSRD FASSRIAPPL QPAPSPLLAP GDVAMGGAIV WQWVEPMSPT FEQTSLSSGV QQVPEFEGRG SGMGLTDSGT AVETPFPFCL
301: LGQCFF

Best Arabidopsis Sequence Match ( AT2G26150.1 )
(BLAST)

001: MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP

Arabidopsis Description

HSFA2Heat stress transcription factor A-2 [Source:UniProtKB/Swiss-Prot;Acc:O80982]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.