Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G382900.1 | Wheat | nucleus | 95.11 | 96.15 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 91.85 | 94.41 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 90.22 | 89.25 |
| Os10t0419300-00 | Rice | nucleus | 75.27 | 77.37 |
| EER94213 | Sorghum | nucleus | 74.73 | 75.97 |
| Zm00001d032923_P002 | Maize | nucleus | 70.11 | 72.27 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 57.07 | 61.58 |
| Solyc06g053960.2.1 | Tomato | nucleus | 22.83 | 59.15 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 45.65 | 54.55 |
| Bra012829.1-P | Field mustard | nucleus | 34.51 | 51.21 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 45.92 | 50.75 |
| CDX95313 | Canola | nucleus | 36.41 | 50.0 |
| AT3G51910.1 | Thale cress | nucleus | 36.41 | 49.26 |
| VIT_00s0179g00150.t01 | Wine grape | nucleus | 47.83 | 48.75 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 45.11 | 47.98 |
| Bra012828.1-P | Field mustard | nucleus | 35.05 | 47.96 |
| CDX90626 | Canola | nucleus | 35.05 | 47.96 |
| KRG95588 | Soybean | nucleus | 47.83 | 47.57 |
| CDY29054 | Canola | nucleus | 34.24 | 47.55 |
| KRH67266 | Soybean | nucleus | 49.73 | 47.41 |
| CDX94887 | Canola | nucleus | 34.78 | 47.41 |
| KRH31657 | Soybean | nucleus | 42.93 | 46.88 |
| KRG91367 | Soybean | nucleus | 46.47 | 46.72 |
| TraesCS5A01G383800.1 | Wheat | nucleus | 47.01 | 46.51 |
| CDX90627 | Canola | nucleus | 35.6 | 45.64 |
| KRH32059 | Soybean | nucleus | 42.12 | 45.45 |
| TraesCS2A01G089300.1 | Wheat | nucleus | 50.27 | 44.79 |
| Solyc09g082670.2.1 | Tomato | nucleus | 42.66 | 44.1 |
| KRH35452 | Soybean | nucleus | 43.75 | 43.99 |
| PGSC0003DMT400016511 | Potato | nucleus | 43.21 | 43.92 |
| CDY34229 | Canola | nucleus | 44.29 | 43.01 |
| CDY10674 | Canola | nucleus | 45.11 | 42.67 |
| PGSC0003DMT400049793 | Potato | nucleus | 42.12 | 42.58 |
| CDX94884 | Canola | nucleus | 33.15 | 42.51 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 40.49 | 42.33 |
| TraesCS3A01G405200.1 | Wheat | nucleus | 45.65 | 42.32 |
| PGSC0003DMT400049795 | Potato | nucleus | 41.3 | 42.22 |
| Solyc09g065660.2.1 | Tomato | nucleus | 42.66 | 42.2 |
| Bra001885.1-P | Field mustard | nucleus | 44.57 | 41.94 |
| CDY46606 | Canola | nucleus | 43.48 | 41.78 |
| CDY10311 | Canola | nucleus | 44.02 | 41.75 |
| CDY46607 | Canola | nucleus | 41.85 | 41.51 |
| PGSC0003DMT400041944 | Potato | nucleus | 38.59 | 41.28 |
| Bra033913.1-P | Field mustard | nucleus | 45.65 | 41.28 |
| Bra023800.1-P | Field mustard | nucleus | 44.57 | 41.21 |
| AT5G43840.1 | Thale cress | nucleus | 31.25 | 40.78 |
| CDX92958 | Canola | nucleus | 38.04 | 40.7 |
| AT3G22830.1 | Thale cress | nucleus | 44.84 | 40.64 |
| AT3G63350.1 | Thale cress | nucleus | 30.98 | 40.43 |
| TraesCS3A01G280800.1 | Wheat | nucleus | 25.82 | 40.25 |
| CDY14893 | Canola | nucleus | 28.53 | 40.08 |
| Bra007739.1-P | Field mustard | nucleus | 30.98 | 40.0 |
| CDY11470 | Canola | nucleus | 30.98 | 40.0 |
| CDX76693 | Canola | nucleus | 30.98 | 40.0 |
| Bra035993.1-P | Field mustard | nucleus | 29.08 | 38.08 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 27.72 | 37.36 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 26.9 | 37.22 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 27.45 | 36.86 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 25.54 | 35.88 |
| TraesCS7A01G360400.1 | Wheat | nucleus | 32.88 | 33.8 |
| TraesCS3A01G393100.1 | Wheat | nucleus | 24.73 | 32.27 |
| TraesCS3A01G393200.1 | Wheat | nucleus | 27.45 | 32.17 |
| TraesCS4A01G062800.1 | Wheat | nucleus | 32.88 | 31.59 |
| TraesCS4A01G322300.1 | Wheat | nucleus | 43.21 | 30.52 |
| TraesCS3A01G229000.1 | Wheat | nucleus | 26.63 | 30.15 |
| TraesCS6A01G098800.1 | Wheat | nucleus | 33.97 | 27.29 |
| TraesCS2A01G204500.1 | Wheat | nucleus | 35.33 | 26.05 |
| TraesCS1A01G350400.2 | Wheat | nucleus | 31.25 | 25.96 |
| TraesCS3A01G289200.1 | Wheat | nucleus | 29.08 | 24.77 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042802 | GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 |
| PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF258 | SMART:SM00415 |
| SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS1A01G375600 | EnsemblPlants:TraesCS1A01G375600.2 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
No Description!
Coordinates
chr1A:-:550312339..550314347
Molecular Weight (calculated)
41701.8 Da
IEP (calculated)
4.737
GRAVY (calculated)
-0.829
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAMPPEGIV KEEEVLLHEE RTHPAAAPPQ QRQDGALPRP MEGLHEAGPP PFLTKTYDLV EDPATDQVVS WGRAGNTFVV WDPHVFAEAL LPRLFKHSNF
101: SSFVRQLNTY GFRKVDPDRW EFANEGFLRG QRHLLKTIKR RKPPSNAPSS QQQALTSCLE VGEFGFEEEI DRLKRDKNLL ITEVVKLRQE QQATKDNVQA
201: MEGRLRAAEQ RQAQMMGFLA RAMRNPHFFQ QLVQKQDKRK ELEDAISKKR RRPIDNAPFY GSGATTSQSE QLDSQFLFDS GVLSEPGMNG MENLAQNIQE
301: LGQGKTDEEK KDEANGQLDI NSDFWAELFS DDFGDEDGSG LSELEGRRPE DIDELGQQLG YLSSTSPQ
101: SSFVRQLNTY GFRKVDPDRW EFANEGFLRG QRHLLKTIKR RKPPSNAPSS QQQALTSCLE VGEFGFEEEI DRLKRDKNLL ITEVVKLRQE QQATKDNVQA
201: MEGRLRAAEQ RQAQMMGFLA RAMRNPHFFQ QLVQKQDKRK ELEDAISKKR RRPIDNAPFY GSGATTSQSE QLDSQFLFDS GVLSEPGMNG MENLAQNIQE
301: LGQGKTDEEK KDEANGQLDI NSDFWAELFS DDFGDEDGSG LSELEGRRPE DIDELGQQLG YLSSTSPQ
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.