Factsheet for Bra017595.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13041	Canola	nucleus	90.29	100.0
CDY23108	Canola	nucleus	97.65	97.65
AT5G45710.3	Thale cress	nucleus	79.41	78.26
Bra012571.1-P	Field mustard	nucleus	62.06	54.1
Bra020988.1-P	Field mustard	nucleus	54.12	52.72
VIT_10s0003g01770.t01	Wine grape	nucleus	52.35	51.3
KRH42919	Soybean	nucleus	58.24	49.25
KRH59030	Soybean	nucleus	58.24	49.25
KRH21206	Soybean	nucleus	56.47	48.98
KRH11063	Soybean	nucleus	56.18	48.72
GSMUA_Achr8P27750_001	Banana	nucleus	29.12	44.8
Solyc02g072000.2.1	Tomato	nucleus	52.35	43.63
Solyc03g006000.2.1	Tomato	nucleus	50.0	42.39
PGSC0003DMT400071487	Potato	nucleus	50.0	42.18
Bra013358.1-P	Field mustard	nucleus	59.41	39.07
Os01t0749300-02	Rice	nucleus	47.06	36.36
EES01479	Sorghum	nucleus	45.29	35.48
TraesCS3A01G289200.1	Wheat	nucleus	44.71	35.19
Zm00001d012749_P001	Maize	nucleus	44.41	34.87
HORVU3Hr1G071550.3	Barley	nucleus	44.12	34.72
TraesCS3B01G323800.1	Wheat	nucleus	45.0	34.69
GSMUA_Achr6P31750_001	Banana	nucleus	48.82	34.16
GSMUA_Achr3P15640_001	Banana	nucleus	45.29	34.0
TraesCS3D01G289000.1	Wheat	nucleus	40.0	32.69
Bra012829.1-P	Field mustard	nucleus	23.53	32.26
HORVU1Hr1G081300.1	Barley	nucleus	40.29	31.79
Bra012828.1-P	Field mustard	nucleus	25.0	31.6
Zm00001d010812_P001	Maize	nucleus	41.18	31.18
Os05t0530400-01	Rice	nucleus	41.47	30.72
TraesCS1A01G350400.2	Wheat	nucleus	39.71	30.47
EES18551	Sorghum	nucleus	41.18	29.41
Bra007739.1-P	Field mustard	nucleus	23.82	28.42
Zm00001d038746_P001	Maize	nucleus	38.82	28.14
Bra035993.1-P	Field mustard	nucleus	23.24	28.11
Bra000557.1-P	Field mustard	nucleus	27.94	27.3
Bra023584.1-P	Field mustard	nucleus	33.82	26.02
Bra040179.1-P	Field mustard	nucleus	32.65	25.69
Bra032752.1-P	Field mustard	nucleus	35.59	25.37
Bra013253.1-P	Field mustard	nucleus	20.88	25.27
Bra015050.1-P	Field mustard	nucleus	22.65	24.92
Bra009515.1-P	Field mustard	nucleus	26.18	24.52
Bra033913.1-P	Field mustard	nucleus	29.12	24.32
Bra023800.1-P	Field mustard	nucleus	28.24	24.12
Bra001885.1-P	Field mustard	nucleus	27.65	24.04
Bra021381.1-P	Field mustard	nucleus	31.47	23.57
Bra032023.1-P	Field mustard	nucleus	31.47	23.46
Bra008593.1-P	Field mustard	nucleus	33.24	23.4
Bra001071.1-P	Field mustard	nucleus	30.88	23.18
Bra023258.1-P	Field mustard	nucleus	30.88	21.56
Bra035507.1-P	Field mustard	nucleus	22.65	18.03

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EnsemblPlantsGene:Bra017595	EnsemblPlants:Bra017595.1	EnsemblPlants:Bra017595.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009408
GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009653	GO:GO:0009719	GO:GO:0009733
GO:GO:0009791	GO:GO:0009958	GO:GO:0009987	GO:GO:0043565	GO:GO:0048364	GO:GO:0048527
GO:GO:0048530	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:M4DM63	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF154	SMART:SM00415	SUPFAM:SSF46785
UniParc:UPI000254259A	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

AT5G45710 (E=1e-141) AT-HSFA4C, RHA1, HSFA4C | RHA1 (ROOT HANDEDNESS 1); DNA binding / transcription factor

Coordinates

chrA09:-:16769187..16770272

Molecular Weight (calculated)

39046.7 Da

IEP (calculated)

5.924

GRAVY (calculated)

-0.822

Length

340 amino acids

Sequence
(BLAST)

001: MDENNGVSTS LPPFLTKTYE MVDDSSSDSI ISWSDHNKSF IVKSPAEFSK DLLPRFFKHK NFSSFIRQLN TYGFRKVDPE KWEFANEDFV RGQPYLMKNI
101: HRRKPVHSHS LQNLQAQSPL SESERQSMKD QIERLKREKE VLLADLQNQE LERKGFELQV TALKDRLQHM EQRQRSIVTF VSQVLEKPGL SLNLETHERR
201: KRKLQETETS LPPSRSHAAQ VEKLESSLTF LENLVTESCD KGMDIDVNES TSCAESLSNG DNRAKSTKID MNAEPVTIAV AAPKTGVNDV FWEQCLTENP
301: GSIEQQEVQS ERRDVDANKI GDGRTFWWNA KNVNDIAERA

Best Arabidopsis Sequence Match ( AT5G45710.1 )
(BLAST)

001: MDENNGGSSS LPPFLTKTYE MVDDSSSDSV VAWSENNKSF IVKNPAEFSR DLLPRFFKHK NFSSFIRQLN TYGFRKVDPE KWEFLNDDFV RGRPYLMKNI
101: HRRKPVHSHS LVNLQAQNPL TESERRSMED QIERLKNEKE GLLAELQNQE QERKEFELQV TTLKDRLQHM EQHQKSIVAY VSQVLGKPGL SLNLENHERR
201: KRRFQENSLP PSSSHIEQVE KLESSLTFWE NLVSESCEKS GLQSSSMDHD AAESSLSIGD TRPKSSKIDM NSEPPVTVTA PAPKTGVNDD FWEQCLTENP
301: GSTEQQEVQS ERRDVGNDNN GNKIGNQRTY WWNSGNVNNI TEKAS

Arabidopsis Description

HSFA4CRHA1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.