Factsheet for Bra035909.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra000741.1-P
Bra009283.1-P
Bra016795.1-P
Bra024839.1-P
Bra024840.1-P
Bra035239.1-P
Bra040179.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02500.1	Bra016795.1-P	AT1G12060.1	16003391
AT5G02500.1	Bra024839.1-P	AT2G01950.1	19000166
AT5G02500.1	Bra024840.1-P	AT2G01950.1	19000166
AT5G02500.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G02500.1	Bra000741.1-P	AT4G11260.1	18065690
AT5G02500.1	Bra035239.1-P	AT4G11260.1	18065690
AT5G02500.1	Bra040179.1-P	AT4G17750.1	11807141
AT5G02500.1	Bra009283.1-P	AT5G07220.1	16003391

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009584.1-P	Field mustard	cytosol	86.71	89.69
Bra009583.1-P	Field mustard	cytosol	91.26	86.71
AT5G02500.1	Thale cress	cytosol	96.85	85.1
Bra024699.1-P	Field mustard	cytosol	85.49	83.73
Bra013046.1-P	Field mustard	cytosol	78.67	82.42
Bra035470.1-P	Field mustard	cytosol	85.49	82.05
Bra038734.1-P	Field mustard	cytosol	91.78	80.77
Bra001457.1-P	Field mustard	cytosol	82.17	79.93
CDY40362	Canola	cytosol, mitochondrion	61.71	77.75
Bra018725.1-P	Field mustard	cytosol	45.63	75.65
Bra026084.1-P	Field mustard	cytosol	79.72	70.48
Bra016644.1-P	Field mustard	cytosol	79.9	70.31
Zm00001d048687_P002	Maize	cytosol, extracellular, plasma membrane	58.57	65.05
TraesCS6D01G402500.1	Wheat	cytosol	58.04	64.09
Bra015047.1-P	Field mustard	endoplasmic reticulum	62.59	53.75
Bra028521.1-P	Field mustard	endoplasmic reticulum	62.41	53.68
Bra022819.1-P	Field mustard	endoplasmic reticulum	62.41	53.36
Bra023110.1-P	Field mustard	endoplasmic reticulum	57.87	51.56
Bra031657.1-P	Field mustard	endoplasmic reticulum	58.39	49.63
Bra002461.1-P	Field mustard	cytosol	37.24	40.11
Bra028628.1-P	Field mustard	mitochondrion	46.5	39.12
Bra006027.1-P	Field mustard	mitochondrion	46.33	38.91
Bra010620.1-P	Field mustard	mitochondrion	45.28	38.31
Bra011794.1-P	Field mustard	mitochondrion	44.76	37.54
Bra010498.1-P	Field mustard	plastid	45.8	36.54
Bra013786.1-P	Field mustard	plastid	45.1	36.29
Bra019231.1-P	Field mustard	plastid	44.93	36.2

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1
EnsemblPlantsGene:Bra035909	EnsemblPlants:Bra035909.1	EnsemblPlants:Bra035909.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam
InterPro:IPR029047	InterPro:IPR029048	UniProt:M4F4A9	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297
ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF323	SUPFAM:SSF100920	SUPFAM:SSF100934
SUPFAM:SSF53067	UniParc:UPI000254208A	SEG:seg	:	:	:

Description

AT5G02500 (E=3e-215) HSC70-1, HSP70-1, AT-HSC70-1, HSC70 | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding

Coordinates

chrA09:-:2953980..2956118

Molecular Weight (calculated)

62824.7 Da

IEP (calculated)

4.830

GRAVY (calculated)

-0.410

Length

572 amino acids

Sequence
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDSSVQSDM KLWLFKIIAG
101: PAEKPMIVVN YKGEEKQFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: SALTRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGKF ELSGIPPAPR
401: GVPQITVCFD IDANGILNVS AEDKTTGQKN KITITNDKGR LSKDDIEKMV QEAEKYKSED EEHKKKVEAK NALENYAYNM RNTIQDDKIG EKLPAADKKK
501: IEDSIEQAIQ WLENNQLGEA DEFEDKMKEL ESICNPIIAK MYQGAGGEAA GMDDDDAPPA SGGAGPKIEE VD

Best Arabidopsis Sequence Match ( AT5G02500.2 )
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKMVQEAEK
401: YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED KMKELESICN PIIAKMYQGA GGEAGGPGAS
501: GMDDDAPPAS GGAGPKIEEV D

Arabidopsis Description

MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.