CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70017
CDX78797
CDX86798
CDX90794
CDX98996
CDY03088
CDY05137
CDY13243
CDY17621
CDY21029
CDY31236
CDY60785
CDY63435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02500.1	CDY21029	AT1G12060.1	16003391
AT5G02500.1	CDY31236	AT1G12060.1	16003391
AT5G02500.1	CDY03088	AT2G01950.1	19000166
AT5G02500.1	CDY17621	AT2G01950.1	19000166
AT5G02500.1	CDX86798	AT4G11260.1	18065690
AT5G02500.1	CDX90794	AT4G11260.1	18065690
AT5G02500.1	CDY05137	AT4G11260.1	18065690
AT5G02500.1	CDY13243	AT4G11260.1	18065690
AT5G02500.1	CDY63435	AT4G11260.1	18065690
AT5G02500.1	CDX78797	AT4G17750.1	11807141
AT5G02500.1	CDY60785	AT4G17750.1	11807141
AT5G02500.1	CDX70017	AT5G07220.1	16003391
AT5G02500.1	CDX98996	AT5G07220.1	16003391

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49668	Canola	cytosol	73.79	67.27
CDY35063	Canola	cytosol	73.35	64.29
CDY33359	Canola	cytosol	73.35	64.29
AT5G02500.1	Thale cress	cytosol	89.65	62.52
Bra035909.1-P	Field mustard	cytosol	77.75	61.71
Bra009583.1-P	Field mustard	cytosol	81.72	61.63
CDY52661	Canola	cytosol	85.24	59.81
CDY50531	Canola	cytosol	85.46	59.69
CDX73815	Canola	cytosol	85.02	59.2
CDY00784	Canola	cytosol	84.58	59.08
CDX83960	Canola	cytosol	74.67	52.15
CDX96825	Canola	cytosol	74.01	51.69
TraesCS6D01G402500.1	Wheat	cytosol	47.58	41.7
Zm00001d048687_P002	Maize	cytosol, extracellular, plasma membrane	46.7	41.16
CDY13371	Canola	cytosol, endoplasmic reticulum	54.85	37.0
CDY63497	Canola	endoplasmic reticulum	51.32	36.29
CDX77423	Canola	cytosol, endoplasmic reticulum	51.32	36.29
CDX79726	Canola	endoplasmic reticulum	51.32	36.29
CDY46766	Canola	endoplasmic reticulum	51.1	36.14
CDX84809	Canola	endoplasmic reticulum	51.1	36.14
CDY23972	Canola	endoplasmic reticulum	51.1	36.14
CDY22648	Canola	cytosol	47.36	35.54
CDX67525	Canola	endoplasmic reticulum	44.05	34.66
CDY06347	Canola	endoplasmic reticulum	47.36	33.49
CDY34275	Canola	cytosol	43.83	31.84
CDY24832	Canola	cytosol	43.61	31.68
CDY08914	Canola	cytosol	43.17	31.56
CDY11007	Canola	cytosol	42.95	31.35
CDX85810	Canola	mitochondrion	42.29	28.24
CDX81132	Canola	mitochondrion	42.07	28.05
CDY56552	Canola	mitochondrion	42.07	28.05
CDX90397	Canola	mitochondrion	41.63	27.88
CDY49682	Canola	mitochondrion	41.63	27.75
CDY03462	Canola	plastid	43.39	27.67
CDX92631	Canola	plastid	42.95	27.54
CDX69342	Canola	mitochondrion	41.19	27.5
CDX75683	Canola	mitochondrion	41.19	27.42
CDY03461	Canola	plastid	40.75	26.02
CDY03459	Canola	cytosol	37.0	25.38
CDY44807	Canola	mitochondrion	42.51	24.43
CDY49667	Canola	nucleus	0.88	5.33

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	GO:A0A078HR94
UniProt:A0A078HR94	EnsemblPlants:CDY40362	ProteinID:CDY40362	ProteinID:CDY40362.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00069553001	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301
ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF323	SUPFAM:SSF100920	SUPFAM:SSF100934
SUPFAM:SSF53067	UniParc:UPI0004EE482C	SEG:seg	:	:	:

Description

BnaA10g27060DBnaA10g27060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HR94]

Coordinates

chrLK032468:+:286615..288149

Molecular Weight (calculated)

50749.6 Da

IEP (calculated)

5.509

GRAVY (calculated)

-0.623

Length

454 amino acids

Sequence
(BLAST)

001: MFYVEQKKRV LNFFFLIKKK KKINRAPPRG GGAPKHYTDK EKNVLIFDLG GGTFDVSLLT IEEGIFEVKA TAGDTHLGGE DFDNRMVNHF VQEFKRKSKK
101: DITGNPRALR RLRTACERAK RTLSSTAQTT IEIDSLFEGI DFYSALTRAR FEELNMDLFR KCMEPVEKCL RDAKMDKSTV HDVVLVGGST RIPKVQQLLQ
201: DFFNGKELCN GEGNEKVQDL LLLDVTPLSL GLETAGGVMT TLIARNTTIP TKKEQVFEGE RARTKDNNLL GKFELSGIPP APRGVPQITV CFDIDANGIL
301: NVSAEDKTTG QKNKITITND KGRLSKDDIE KMVQEAEKYK SEDEEHKKKV EAKNALENYA YNMRNTIQDE KIGEKLPAAD KKKIEESIEQ AIQWLENNQL
401: GEADEFEDKM KELESICNPI IAKMYQGAGG EAAGMDDDAP PASGGAGPKI EEVD

Best Arabidopsis Sequence Match ( AT3G09440.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FTDSSVQSDI KLWPFTLKSG
101: PAEKPMIVVN YKGEDKEFSA EEISSMILIK MREIAEAYLG TTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFDGIDFY
301: APITRARFEE LNIDLFRKCM EPVEKCLRDA KMDKNSIDDV VLVGGSTRIP KVQQLLVDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI QRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVDAKNALEN YAYNMRNTIR DEKIGEKLAG DDKKKIEDSI EAAIEWLEAN QLAECDEFED
601: KMKELESICN PIIAKMYQGG EAGGPAAGGM DEDVPPSAGG AGPKIEEVD

Arabidopsis Description

HSP70-3Heat shock protein 70 (Hsp 70) family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.