CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40362	Canola	cytosol, mitochondrion	67.27	73.79
CDY33359	Canola	cytosol	66.47	63.9
CDY35063	Canola	cytosol	66.47	63.9
CDY52661	Canola	cytosol	81.73	62.91
CDX73815	Canola	cytosol	82.33	62.88
CDY50531	Canola	cytosol	81.93	62.77
CDY00784	Canola	cytosol	81.93	62.77
CDX83960	Canola	cytosol	73.49	56.31
CDX96825	Canola	cytosol	73.09	56.0
CDY22648	Canola	cytosol	51.81	42.64
CDY13371	Canola	cytosol, endoplasmic reticulum	56.43	41.75
CDY63497	Canola	endoplasmic reticulum	52.81	40.97
CDX79726	Canola	endoplasmic reticulum	52.81	40.97
CDX77423	Canola	cytosol, endoplasmic reticulum	52.81	40.97
CDY46766	Canola	endoplasmic reticulum	52.61	40.81
CDX84809	Canola	endoplasmic reticulum	52.61	40.81
CDY23972	Canola	endoplasmic reticulum	52.61	40.81
CDY06347	Canola	endoplasmic reticulum	51.81	40.19
CDX67525	Canola	endoplasmic reticulum	45.98	39.69
CDY34275	Canola	cytosol	40.56	32.32
CDY24832	Canola	cytosol	40.36	32.16
CDY11007	Canola	cytosol	40.16	32.15
CDY08914	Canola	cytosol	39.96	32.05
CDX90397	Canola	mitochondrion	41.57	30.53
CDX85810	Canola	mitochondrion	41.57	30.44
CDY49682	Canola	mitochondrion	41.57	30.4
CDX75683	Canola	mitochondrion	41.57	30.35
CDX69342	Canola	mitochondrion	41.37	30.29
CDX81132	Canola	mitochondrion	41.37	30.25
CDY56552	Canola	mitochondrion	41.37	30.25
CDX92631	Canola	plastid	40.16	28.25
CDY03462	Canola	plastid	40.36	28.23
CDY03461	Canola	plastid	38.35	26.86
CDY44807	Canola	mitochondrion	40.16	25.32
CDY03459	Canola	cytosol	32.53	24.47
CDY49667	Canola	nucleus	0.6	4.0

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1
GO:A0A078IKS1	UniProt:A0A078IKS1	EnsemblPlants:CDY49668	ProteinID:CDY49668	ProteinID:CDY49668.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00093544001	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012
PRINTS:PR00301	ScanProsite:PS00329	PANTHER:PTHR19375	PANTHER:PTHR19375:SF323	SUPFAM:SSF100920	SUPFAM:SSF100934
SUPFAM:SSF53067	UniParc:UPI0004EF101B	SEG:seg	:	:	:

Description

BnaC06g01970DProbable mediator of RNA polymerase II transcription subunit 37e [Source:Projected from Arabidopsis thaliana (AT5G02500) UniProtKB/Swiss-Prot;Acc:P22953]

Coordinates

chrLK032851:+:18807..20701

Molecular Weight (calculated)

54700.7 Da

IEP (calculated)

4.854

GRAVY (calculated)

-0.518

Length

498 amino acids

Sequence
(BLAST)

001: MLKALGLSDS SVQSDMKLWP FKIIPGPADK PMILVNYKGE EKQFPSEEIS SMVLIKMPSS HKGSWLAYGL DKKASSDGEK NVLIFDLGGG TFDVSLLTIE
101: EGIFEVKATS GDTHLSGEDF DSRIVNHFVQ EFKRKSKKDI SGNPRALRRL RTACERAKRT LSSTAQTTIE IDSRFEGIDF YSALTRARFE ELNMDLFRKC
201: STRIPKVQKL LQDFFNGKEL CKSINPDEAV AYGAAVQGAI VSGEGNAKLQ DLLLLDVNPL SLGIETVGGV MTTLIQRSTT ILTNTEQVFS TCSDNQPGVL
301: IQVYEGERAR TQDNNLLGKF KLSGIPPAPR GVPQITVCFE IDANSTKDNT TGQKNKITIT NDKGRLSKDE IKKMVQEAEK YKSEDEEHKK KVEAKNALEN
401: YAYNMRNTIR DDKIGEKLAA ADKKKIEDSV EEAVQWLDGN QTAEADEFED NMKDLESVCN PIIANMYQGG AGGEAGGPAD DESPAAAGGA GPKIEEVD

Best Arabidopsis Sequence Match ( AT3G09440.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FTDSSVQSDI KLWPFTLKSG
101: PAEKPMIVVN YKGEDKEFSA EEISSMILIK MREIAEAYLG TTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFDGIDFY
301: APITRARFEE LNIDLFRKCM EPVEKCLRDA KMDKNSIDDV VLVGGSTRIP KVQQLLVDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI QRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVDAKNALEN YAYNMRNTIR DEKIGEKLAG DDKKKIEDSI EAAIEWLEAN QLAECDEFED
601: KMKELESICN PIIAKMYQGG EAGGPAAGGM DEDVPPSAGG AGPKIEEVD

Arabidopsis Description

HSP70-3Heat shock protein 70 (Hsp 70) family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.