Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra013015.1-P | |
| Bra035499.1-P | |
| Bra035958.1-P | |
| Bra040179.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55520.1 | Bra035499.1-P | AT1G32750.1 | 17340043 |
| AT1G55520.1 | Bra040179.1-P | AT4G17750.1 | 9801140 |
| AT1G55520.1 | Bra013015.1-P | AT5G23080.1 | 16024589 |
| AT1G55520.1 | Bra035958.1-P | AT5G23080.1 | 16024589 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08246 | Canola | nucleus | 99.5 | 99.5 |
| CDY26099 | Canola | nucleus | 99.5 | 99.5 |
| Bra030855.1-P | Field mustard | nucleus | 97.0 | 97.0 |
| AT1G55520.1 | Thale cress | nucleus | 96.5 | 96.5 |
| GSMUA_Achr6P23210_001 | Banana | nucleus | 95.5 | 95.5 |
| EES16412 | Sorghum | nucleus | 94.5 | 94.5 |
| TraesCS4D01G014000.2 | Wheat | nucleus | 94.0 | 94.0 |
| Bra027434.1-P | Field mustard | nucleus | 94.0 | 94.0 |
| TraesCS4A01G298000.1 | Wheat | nucleus | 94.0 | 94.0 |
| KRH40768 | Soybean | nucleus | 93.5 | 93.5 |
| Solyc01g028930.2.1 | Tomato | nucleus | 94.5 | 93.1 |
| KRH65451 | Soybean | nucleus | 93.0 | 93.0 |
| KRH00416 | Soybean | nucleus | 93.0 | 93.0 |
| KRH08285 | Soybean | nucleus | 93.0 | 93.0 |
| TraesCS5A01G022000.1 | Wheat | nucleus | 92.5 | 92.5 |
| TraesCS5D01G027800.3 | Wheat | nucleus | 92.5 | 92.5 |
| Os03t0657000-01 | Rice | nucleus | 92.0 | 90.64 |
| TraesCS5B01G018500.1 | Wheat | nucleus | 91.0 | 90.55 |
| GSMUA_Achr1P26830_001 | Banana | nucleus | 96.0 | 88.07 |
| Os12t0580300-01 | Rice | nucleus | 91.0 | 87.5 |
| Bra028725.1-P | Field mustard | nucleus | 82.5 | 80.88 |
| VIT_06s0004g00180.t01 | Wine grape | nucleus | 94.0 | 78.99 |
| Bra005905.1-P | Field mustard | nucleus | 70.5 | 78.77 |
| Bra005902.1-P | Field mustard | nucleus | 81.0 | 77.88 |
| TraesCS4B01G015700.2 | Wheat | nucleus | 86.0 | 76.79 |
| GSMUA_Achr5P08990_001 | Banana | nucleus | 95.0 | 66.9 |
| HORVU4Hr1G002400.5 | Barley | golgi | 94.0 | 55.79 |
| Zm00001d013856_P001 | Maize | nucleus | 41.0 | 52.56 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | EnsemblPlantsGene:Bra011920 | EnsemblPlants:Bra011920.1 | EnsemblPlants:Bra011920.1-P |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR012295 | UniProt:M4D612 |
| HAMAP:MF_00408 | PFAM:PF00352 | PRINTS:PR00686 | ScanProsite:PS00351 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 |
| SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_CS | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI00025412F0 |
Description
AT1G55520 (E=8e-107) TBP2, ATTBP2 | TBP2 (TATA BINDING PROTEIN 2); DNA binding / RNA polymerase II transcription factor/ TATA-binding protein binding
Coordinates
chrA07:+:11344594..11346053
Molecular Weight (calculated)
22417.7 Da
IEP (calculated)
10.140
GRAVY (calculated)
-0.037
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQGMEGSQ PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHCAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLTEFRKIQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHCAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLTEFRKIQQ
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.