Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra011920.1-P | |
| Bra030855.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G23080.1 | Bra011920.1-P | AT1G55520.1 | 16024589 |
| AT5G23080.1 | Bra030855.1-P | AT1G55520.1 | 16024589 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02204 | Canola | nucleus | 96.63 | 82.36 |
| Bra035958.1-P | Field mustard | nucleus | 85.79 | 72.42 |
| AT5G23080.1 | Thale cress | nucleus | 80.8 | 69.68 |
| KRH03843 | Soybean | nucleus | 54.49 | 43.53 |
| VIT_17s0000g04440.t01 | Wine grape | nucleus | 53.99 | 43.43 |
| KRH56717 | Soybean | nucleus | 53.74 | 42.5 |
| Solyc03g114410.2.1 | Tomato | nucleus | 49.75 | 40.55 |
| TraesCS7A01G231500.1 | Wheat | nucleus | 42.89 | 34.71 |
| TraesCS7B01G129900.1 | Wheat | nucleus | 42.52 | 34.41 |
| TraesCS7D01G231700.1 | Wheat | nucleus | 42.39 | 34.31 |
| KXG19969 | Sorghum | nucleus | 42.02 | 33.9 |
| Zm00001d045954_P004 | Maize | nucleus | 41.27 | 33.47 |
| Os06t0489200-01 | Rice | nucleus | 41.02 | 33.44 |
| GSMUA_Achr8P03600_001 | Banana | nucleus | 44.64 | 32.34 |
| HORVU7Hr1G047420.9 | Barley | mitochondrion | 35.29 | 27.66 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.10.2.1.4 | EnsemblPlantsGene:Bra013015 | EnsemblPlants:Bra013015.1 | EnsemblPlants:Bra013015.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000061 | InterPro:IPR035967 | UniProt:M4D955 |
| PFAM:PF01805 | PFscan:PS50128 | PANTHER:PTHR13384 | PANTHER:PTHR13384:SF19 | SMART:SM00648 | SUPFAM:SSF109905 |
| InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI000254048F | SEG:seg | : | : |
Description
AT5G23080 (E=2e-253) TGH | TGH (TOUGH); RNA binding / protein binding
Coordinates
chrA03:+:21009008..21014369
Molecular Weight (calculated)
90447.1 Da
IEP (calculated)
6.355
GRAVY (calculated)
-1.159
Length
802 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDEDDFVF HGTPIEREDE IASRKKKAVA GASGTLKTLP AWKQEELEGQ SLSASSQFDT FGFTAAEHSR KQAEKEQHER PSAIPGPVHD ELIAPAPESI
101: DARREARKAF LAFSSDENTK ESSDSLVLET EAETSLGPQF SEDIKFSETT PVYVLNPKQD LHGLGYDPFK HAPEFRGYDF DQTYVIEDEQ PARPSNDNRL
201: RLTSKEHNVL PGFGAASNSD YSVERFDPPK IPKDFVARHK FSGPRETETK PTASTPPDVP PPEDKNLKLL IDGFATFVSR CGKLYEDLSR EKNESNQLFD
301: FLRGGSGHDY YARRLWEEQQ KRSGQSNLQL DVKVPPSVQE MTAETRGSLL GERPLQKSLK ETETSSSSGG SFQFPTNLSD TFTKSASSQE AADAIKPFKE
401: DLAKQERFEQ FLKEKYKGGL RSSDSNRFNI VSESARAQER LDFEAAAEAI EKGKAYKEVR RATERPIDFL AGGLQFTSGG TEQIKDTGVV DMKTSKTYPK
501: REEFQWRPAP LLCKRFDLPD PFMGKPAAAP RARNKMDSLL FLPDTVKAAS GSGARQVSDL QEPEKEPEVE VEVENVERPV DLYKAIFSDD SEDDEEQQPM
601: NGKIQDGQEK KNEAAATTLN RLIAGDFLES LGKELGFEVP SDAPYAEGTK PMEAENKPKG KPDASSERRP GLKEKPEEKT SSHKLVSEEE KSTQKREKSS
701: RNWSGGNDLY SSESSGDERR RKRSKKDRHR NYGSESDSSS DYHKRDKHSS RSRRKQRESS REKRSGHKKH SKHYKTKDSS SSRYSGDEER KESKREKRRR
801: RD
101: DARREARKAF LAFSSDENTK ESSDSLVLET EAETSLGPQF SEDIKFSETT PVYVLNPKQD LHGLGYDPFK HAPEFRGYDF DQTYVIEDEQ PARPSNDNRL
201: RLTSKEHNVL PGFGAASNSD YSVERFDPPK IPKDFVARHK FSGPRETETK PTASTPPDVP PPEDKNLKLL IDGFATFVSR CGKLYEDLSR EKNESNQLFD
301: FLRGGSGHDY YARRLWEEQQ KRSGQSNLQL DVKVPPSVQE MTAETRGSLL GERPLQKSLK ETETSSSSGG SFQFPTNLSD TFTKSASSQE AADAIKPFKE
401: DLAKQERFEQ FLKEKYKGGL RSSDSNRFNI VSESARAQER LDFEAAAEAI EKGKAYKEVR RATERPIDFL AGGLQFTSGG TEQIKDTGVV DMKTSKTYPK
501: REEFQWRPAP LLCKRFDLPD PFMGKPAAAP RARNKMDSLL FLPDTVKAAS GSGARQVSDL QEPEKEPEVE VEVENVERPV DLYKAIFSDD SEDDEEQQPM
601: NGKIQDGQEK KNEAAATTLN RLIAGDFLES LGKELGFEVP SDAPYAEGTK PMEAENKPKG KPDASSERRP GLKEKPEEKT SSHKLVSEEE KSTQKREKSS
701: RNWSGGNDLY SSESSGDERR RKRSKKDRHR NYGSESDSSS DYHKRDKHSS RSRRKQRESS REKRSGHKKH SKHYKTKDSS SSRYSGDEER KESKREKRRR
801: RD
001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFRGKI APGFGIGALE ELDVEDEDVY AGYDFDQTYV IEDEQPARQS
301: NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN NLKLLIEGFA TFVSRCGKLY EDLSREKNQS
401: NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS ASSGGSFQFP TNLSDTFTKS ASSQEAADAV
501: KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS
601: KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS IEEPEVEVEV ENVERPVDLY KAIFSDDSED
701: DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL KEKVEEKTSS LTLGSEEEKS RKKREKSPGK
801: RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFRGKI APGFGIGALE ELDVEDEDVY AGYDFDQTYV IEDEQPARQS
301: NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN NLKLLIEGFA TFVSRCGKLY EDLSREKNQS
401: NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS ASSGGSFQFP TNLSDTFTKS ASSQEAADAV
501: KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS
601: KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS IEEPEVEVEV ENVERPVDLY KAIFSDDSED
701: DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL KEKVEEKTSS LTLGSEEEKS RKKREKSPGK
801: RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
Arabidopsis Description
TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.