Factsheet for AT5G23080.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02204	Canola	nucleus	82.47	81.51
CDY67704	Canola	nucleus	82.58	81.27
Bra013015.1-P	Field mustard	nucleus	69.68	80.8
CDY16838	Canola	nucleus	82.15	80.42
Bra035958.1-P	Field mustard	nucleus	82.04	80.32
CDX87186	Canola	nucleus	81.51	80.04
VIT_17s0000g04440.t01	Wine grape	nucleus	58.6	54.66
KRH03843	Soybean	nucleus	56.88	52.69
Solyc03g114410.2.1	Tomato	nucleus	54.73	51.73
KRH56717	Soybean	nucleus	56.13	51.48
TraesCS7A01G231500.1	Wheat	nucleus	48.28	45.31
TraesCS7B01G129900.1	Wheat	nucleus	48.17	45.21
TraesCS7D01G231700.1	Wheat	nucleus	47.85	44.9
Os06t0489200-01	Rice	nucleus	46.56	44.0
Zm00001d045954_P004	Maize	nucleus	46.13	43.38
KXG19969	Sorghum	nucleus	46.13	43.16
GSMUA_Achr8P03600_001	Banana	nucleus	49.57	41.64
HORVU7Hr1G047420.9	Barley	mitochondrion	37.2	33.82

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.10.2.1.4	EntrezGene:832372	ProteinID:AED93116.1	ProteinID:AED93117.1	EMBL:AK118129
ArrayExpress:AT5G23080	EnsemblPlantsGene:AT5G23080	RefSeq:AT5G23080	TAIR:AT5G23080	RefSeq:AT5G23080-TAIR-G	EnsemblPlants:AT5G23080.1
TAIR:AT5G23080.1	EMBL:AY518689	Unigene:At.49050	ProteinID:BAB09825.1	EMBL:BT008588	InterPro:DUF1604
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006396
GO:GO:0006397	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010087	GO:GO:0016607	GO:GO:0019538	GO:GO:0030422	GO:GO:0031047	GO:GO:0035196
GO:GO:0040007	GO:GO:0040008	GO:GO:0040029	GO:GO:0070878	GO:GO:0070883	InterPro:IPR000061
InterPro:IPR035967	RefSeq:NP_001031926.1	RefSeq:NP_197699.2	PFAM:PF01805	PFAM:PF07713	PO:PO:0000005
PO:PO:0000013	PO:PO:0000035	PO:PO:0000036	PO:PO:0000037	PO:PO:0000230	PO:PO:0000282
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004010
PO:PO:0004507	PO:PO:0006338	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0009062
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PFscan:PS50128	PANTHER:PTHR13384	PANTHER:PTHR13384:SF19	UniProt:Q8GXN9	SMART:SM00648	SUPFAM:SSF109905
InterPro:SWAP/Surp_sf	InterPro:Surp	Symbol:TGH	UniParc:UPI00000ADE9C	SEG:seg	:

Description

TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]

Coordinates

chr5:-:7742940..7749020

Molecular Weight (calculated)

104940.0 Da

IEP (calculated)

7.542

GRAVY (calculated)

-1.111

Length

930 amino acids

Sequence
(BLAST)

001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.