Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G23080.1 | CDY02435 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY08246 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY10555 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY26099 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY56078 | AT1G55520.1 | 16024589 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02204 | Canola | nucleus | 96.83 | 97.24 |
| CDY16838 | Canola | nucleus | 87.3 | 86.84 |
| CDX87186 | Canola | nucleus | 85.82 | 85.64 |
| AT5G23080.1 | Thale cress | nucleus | 81.27 | 82.58 |
| VIT_17s0000g04440.t01 | Wine grape | nucleus | 56.83 | 53.86 |
| KRH03843 | Soybean | nucleus | 57.14 | 53.78 |
| KRH56717 | Soybean | nucleus | 56.08 | 52.27 |
| Solyc03g114410.2.1 | Tomato | nucleus | 52.28 | 50.2 |
| TraesCS7A01G231500.1 | Wheat | nucleus | 46.14 | 44.0 |
| TraesCS7B01G129900.1 | Wheat | nucleus | 45.82 | 43.69 |
| TraesCS7D01G231700.1 | Wheat | nucleus | 45.61 | 43.49 |
| KXG19969 | Sorghum | nucleus | 45.29 | 43.06 |
| Zm00001d045954_P004 | Maize | nucleus | 44.97 | 42.97 |
| Os06t0489200-01 | Rice | nucleus | 44.55 | 42.78 |
| GSMUA_Achr8P03600_001 | Banana | nucleus | 47.72 | 40.74 |
| HORVU7Hr1G047420.9 | Barley | mitochondrion | 35.56 | 32.84 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.10.2.1.4 | GO:A0A078JLL7 | UniProt:A0A078JLL7 | EnsemblPlants:CDY67704 | ProteinID:CDY67704 |
| ProteinID:CDY67704.1 | InterPro:DUF1604 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00066030001 | InterPro:IPR000061 | InterPro:IPR035967 | PFAM:PF01805 | PFAM:PF07713 | PFscan:PS50128 |
| PANTHER:PTHR13384 | PANTHER:PTHR13384:SF19 | SMART:SM00648 | SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf | InterPro:Surp |
| UniParc:UPI0004EF0259 | SEG:seg | : | : | : | : |
Description
BnaCnng56020DBnaCnng56020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLL7]
Coordinates
chrLK036413:+:224..5792
Molecular Weight (calculated)
106331.0 Da
IEP (calculated)
7.853
GRAVY (calculated)
-1.120
Length
945 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDDDDFVF HGTPIEREDE IASRKKKAVA GASGTLKTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRKNRA GARQQSISDF
101: LDEDEKAELE GQSLSASSQF DTFGFTAAEQ SRKQAEKEQH ERPSAIPGPV HDELIAPAPE SIGVKLLLKM GWRRGHSIKD VRASSDARRE ARKAFLAFSA
201: DENTKESSDS LVLETEAETS RGPQFSEDIK FSENTPVYVL NPKQDLHGLG YDPFKHAPEF RENKRSRLSA SKEVGYRKPL SMKESLFGPK SGKMAPGFGI
301: GALEELDVED EDVYAGYDFD QTYVIEDEQP ARPSNDNRLR LTSKEHNVLP GFGAVSNSDY SVERFDPPKI PKDFVARHKF SGPRETETKP TASTPRDVPP
401: PEDKNLKLLI DGFATFVSRC GKLYEDLSRE KNESNQLFDF LRGGSGHDYY ARRLWEEQQK RSGQSNLQLD VKVPPSVPPS VQKMTAETRG SLLGEKPLQK
501: SLKETETSSS SGGSFQFPTN LSDTFTKSAS SQEAADAIKP FKEDLAKQER FEQFLKEKYK GGLRSSDSNR FNIVSESARA QERLDFEAAA EAIEKGKAYK
601: EVRRATERPI DFLAGGLQFT SGGTEQIKDT GVVDMKTSKT YPKREEFQWR PAPLLCKRFD LPDPFMGKPA AAPRARNKMD SLLFLPDTVK AASGSGARQV
701: SDLQEPEKEP EVEVEVENVE RPVDLYKAIF SDDSEDDEEQ QPMNGKIQDG QEKKNEAAAT TLNRLIAGDF LESLGKELGF EVPSDAPYPE GTKPMEADNK
801: PKGKSDASTE RRPGLKEKPE EKTSSLKLVS EKEKSTQKRE KSPRNWSGGN DLSSSESSGD ERRRKRSKKD RHRNYDSESD SSSDYHKRDK HGSRSRRKRR
901: ESSREKRSSH KKHSKHHKTK DYSSSRYSGD EERKESRREK RRRRD
101: LDEDEKAELE GQSLSASSQF DTFGFTAAEQ SRKQAEKEQH ERPSAIPGPV HDELIAPAPE SIGVKLLLKM GWRRGHSIKD VRASSDARRE ARKAFLAFSA
201: DENTKESSDS LVLETEAETS RGPQFSEDIK FSENTPVYVL NPKQDLHGLG YDPFKHAPEF RENKRSRLSA SKEVGYRKPL SMKESLFGPK SGKMAPGFGI
301: GALEELDVED EDVYAGYDFD QTYVIEDEQP ARPSNDNRLR LTSKEHNVLP GFGAVSNSDY SVERFDPPKI PKDFVARHKF SGPRETETKP TASTPRDVPP
401: PEDKNLKLLI DGFATFVSRC GKLYEDLSRE KNESNQLFDF LRGGSGHDYY ARRLWEEQQK RSGQSNLQLD VKVPPSVPPS VQKMTAETRG SLLGEKPLQK
501: SLKETETSSS SGGSFQFPTN LSDTFTKSAS SQEAADAIKP FKEDLAKQER FEQFLKEKYK GGLRSSDSNR FNIVSESARA QERLDFEAAA EAIEKGKAYK
601: EVRRATERPI DFLAGGLQFT SGGTEQIKDT GVVDMKTSKT YPKREEFQWR PAPLLCKRFD LPDPFMGKPA AAPRARNKMD SLLFLPDTVK AASGSGARQV
701: SDLQEPEKEP EVEVEVENVE RPVDLYKAIF SDDSEDDEEQ QPMNGKIQDG QEKKNEAAAT TLNRLIAGDF LESLGKELGF EVPSDAPYPE GTKPMEADNK
801: PKGKSDASTE RRPGLKEKPE EKTSSLKLVS EKEKSTQKRE KSPRNWSGGN DLSSSESSGD ERRRKRSKKD RHRNYDSESD SSSDYHKRDK HGSRSRRKRR
901: ESSREKRSSH KKHSKHHKTK DYSSSRYSGD EERKESRREK RRRRD
001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
Arabidopsis Description
TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.