Factsheet for Solyc03g114410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g028930.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23080.1	Solyc01g028930.2.1	AT1G55520.1	16024589

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g04440.t01	Wine grape	nucleus	57.52	56.77
AT5G23080.1	Thale cress	nucleus	51.73	54.73
Bra035958.1-P	Field mustard	nucleus	51.02	52.84
CDY16838	Canola	nucleus	51.02	52.84
CDY02204	Canola	nucleus	50.51	52.82
CDY67704	Canola	nucleus	50.2	52.28
CDX87186	Canola	nucleus	50.2	52.16
KRH03843	Soybean	nucleus	53.05	51.99
KRH56717	Soybean	nucleus	53.05	51.48
Bra013015.1-P	Field mustard	nucleus	40.55	49.75
Os06t0489200-01	Rice	nucleus	44.92	44.92
Zm00001d045954_P004	Maize	nucleus	44.82	44.59
TraesCS7A01G231500.1	Wheat	nucleus	44.82	44.5
TraesCS7B01G129900.1	Wheat	nucleus	44.82	44.5
KXG19969	Sorghum	nucleus	44.82	44.37
TraesCS7D01G231700.1	Wheat	nucleus	44.61	44.3
GSMUA_Achr8P03600_001	Banana	nucleus	48.17	42.82
HORVU7Hr1G047420.9	Barley	mitochondrion	34.86	33.53

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.10.2.1.4	ncoils:Coil	InterPro:DUF1604	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006396	GO:GO:0006397	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0010087	GO:GO:0019538	GO:GO:0030422	GO:GO:0035196
GO:GO:0040029	GO:GO:0070878	GO:GO:0070883	InterPro:IPR000061	InterPro:IPR035967	UniProt:K4BKU3
PFAM:PF01805	PFAM:PF07713	PFscan:PS50128	PANTHER:PTHR13384	PANTHER:PTHR13384:SF19	SMART:SM00648
SUPFAM:SSF109905	InterPro:SWAP/Surp_sf	EnsemblPlantsGene:Solyc03g114410.2	EnsemblPlants:Solyc03g114410.2.1	InterPro:Surp	UniParc:UPI00027681D8
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:64406405..64420946

Molecular Weight (calculated)

110157.0 Da

IEP (calculated)

6.459

GRAVY (calculated)

-1.003

Length

984 amino acids

Sequence
(BLAST)

001: MDSDEEDFVF YGTPIEREED VSSRKKKAIA EASGQLRTLP AWKQEVTDEE GRRRFHGAFT GGFSAGYYNT VGSKEGWTPQ TFTSSRKNRA EVKQQSLFNF
101: LDDDEKAEME GRLGTSMQYD TFGFTAAEVA RKQAEKEQKQ RPSAIPGPVP DEVVLPVTDS IGLTLLQKMG WRRGRSINSS HTDSLYNAKR EARKAFLAFS
201: FADVDGQPLD SGLAEDAADP IADLPTDDGN HFSKSTPVYL LNPKQDLHGL GYDPYKNAPE FREKKRSRLS NGRETGQQDR VLKDSLFGFK SGRVAPGFGV
301: GALEDLDVED EDVYASGYDF EETCVEEVEE PSRPKVENLK MLDRKAHDVL PGFSAASKSD YQLERFDAPV IPQNFVPRHK FAAPLESDDE APALPPPVFP
401: PPEDNNLRIL IEGLATLVAR SGKLLEDLSR EKNQFNPLFG FLNGGKGHEY YARKLWEERH KRNDQGKQHW DAKMSQKVQK MTAESRGQIL GEKPIERSLR
501: AANSTGISAD AINLTSNLSD TFTKPVSIND LLESAKPFQD DPAKQERFEQ FLKEKYHGGL RPKDGSGASN MSEAARARER LEFESVAETI NKGNHGKESV
601: PPSELFSSTL ATAGLQFTSG GAELAKFGQD DGLAATSMYP KREEFQWRPS SILCKRFDLI DPYMGKPPPA PRARSKLDSL IYLPETVKAP KLEDDVSGGR
701: SQFSLQEGRI EKGKEIADQE IEVDAEPENI ERPVDLYKAI FSDDSDDEAE TSNQDVTEDS QKKVEAVNTT LNRLIAGDFL ESLGKELGLE VPTDMPLPDN
801: KSSNPAKKDS VPLDVRAKSI NQDPILAVGN NNRNISQQGI FSREGTVDMN SRKNGGRGTE TESYRNGIDK NKFEAEGRID AKAKGDQYRN KNSSSSEDET
901: DRKRKRPHRG SSLDASSDSS EGYKDRRSRS RKKKSSQEKS SSSKRHSKHH KHRRRDSRSP SRHSRHGSEK DRREAKREKR KYKD

Best Arabidopsis Sequence Match ( AT5G23080.1 )
(BLAST)

001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD

Arabidopsis Description

TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.