Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G231500.1 | Wheat | nucleus | 98.79 | 98.79 |
| TraesCS7D01G231700.1 | Wheat | nucleus | 98.28 | 98.28 |
| HORVU7Hr1G047420.9 | Barley | mitochondrion | 80.93 | 78.4 |
| Os06t0489200-01 | Rice | nucleus | 74.97 | 75.51 |
| KXG19969 | Sorghum | nucleus | 70.84 | 70.62 |
| Zm00001d045954_P004 | Maize | nucleus | 70.23 | 70.37 |
| VIT_17s0000g04410.t01 | Wine grape | cytosol | 4.64 | 58.23 |
| AT5G23080.1 | Thale cress | nucleus | 45.21 | 48.17 |
| GSMUA_Achr8P03600_001 | Banana | nucleus | 53.28 | 47.7 |
| VIT_17s0000g04440.t01 | Wine grape | nucleus | 46.92 | 46.64 |
| CDX87186 | Canola | nucleus | 43.9 | 45.93 |
| CDY02204 | Canola | nucleus | 43.59 | 45.91 |
| CDY67704 | Canola | nucleus | 43.69 | 45.82 |
| Bra035958.1-P | Field mustard | nucleus | 43.39 | 45.26 |
| CDY16838 | Canola | nucleus | 43.39 | 45.26 |
| KRH03843 | Soybean | nucleus | 45.41 | 44.82 |
| Solyc03g114410.2.1 | Tomato | nucleus | 44.5 | 44.82 |
| KRH56717 | Soybean | nucleus | 45.21 | 44.18 |
| Bra013015.1-P | Field mustard | nucleus | 34.41 | 42.52 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.10.2.1.4 | InterPro:DUF1604 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0010087 | GO:GO:0019538 | GO:GO:0030422 | GO:GO:0035196 | GO:GO:0040029 |
| GO:GO:0070878 | GO:GO:0070883 | InterPro:IPR000061 | InterPro:IPR035967 | PFAM:PF01805 | PFAM:PF07713 |
| PFscan:PS50128 | PANTHER:PTHR13384 | PANTHER:PTHR13384:SF19 | SMART:SM00648 | SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf |
| InterPro:Surp | EnsemblPlantsGene:TraesCS7B01G129900 | EnsemblPlants:TraesCS7B01G129900.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7B:+:156419083..156431964
Molecular Weight (calculated)
111375.0 Da
IEP (calculated)
7.824
GRAVY (calculated)
-0.977
Length
991 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHDDDQDL VVYGTPIERE EDISARKRRA VADAGQLRAL PAWKQEVRDE EGRRRFHGAF TGGFSAGFYN TAGSKEGWTP QTFTSSRKSR AEHKKQSIYN
101: FLDEEDIKDM GGNALETSQQ YDTFGFTAAE HARKQASKEQ NERPSAIPGP VPDELVVPAT TSIGVKLLMK MGWRQGRTIK DAHADSLYES RREARKAFLA
201: LSGVSNDEDQ DQIASQKSRV DENVAESFDK ISASGNTPVY VLHPKEDLHG LGFDPFKHAP EFKDRKRSHK SMNRDRNRSD VSVRGSLLIS NSGQYAPGFG
301: IGALEELGVE DEDIYASGFN YEQTEVDIEP SKTSGDSKFK LEDKKRGFFL SFKIASNSEY KLERFHPPEI PADFDGRHKF SSPIQTADKF SDLAPPEVAP
401: PEDTTLRLLI EGCAAMVARC GKHIEDFYKE KSKASPQFLF LDGGDGCSYY TRKLWEHQQK FIDRQRPDAV KSKPSSDKLT AENRGTILGE KPLDRSSKSS
501: SSFVSAKEAV QLQSNLGDTF VKPISLDGVP ESKKPFRNEP AKQARFEQFL KEKYQGGLRI ASLAPTITMS EADRARERLD FEAAADAIEK GKEYKAIDPL
601: SILGLPGLNE QRFVSSTQLE SSAVLQDERP MYPQREEFEW RPSPILCKRF DIVDPFMGKP MPLRRPISKM DTLMFMTEST KKINEDVRGS STIPQNAAVS
701: GTEEVEAQET ANNPDIVASS MQRPVDLYKA IFSDDSDDDM DEPLNNQQVD PVKTSEGANM ALNRLVAEDF LESLGKELGL EVPAEKPAQP PNVLFRSEIL
801: PTADASVSRN GQTSTFREIK ENECSLGLME AANGNGDGPS SNVEKLDLKY EHSADIGRSH SSHRQIRNGS PESDTSIERH RSRKRRSHHR NRSPTPDSGS
901: SDERRSGKKR KSHSRHRAGR SRTPDADLSS DSQKNKRKRR EKRSHRTRMS DSDSSDHEYK EKYTSSSRRS SDKDRSRKHS KHRRHRRKDS A
101: FLDEEDIKDM GGNALETSQQ YDTFGFTAAE HARKQASKEQ NERPSAIPGP VPDELVVPAT TSIGVKLLMK MGWRQGRTIK DAHADSLYES RREARKAFLA
201: LSGVSNDEDQ DQIASQKSRV DENVAESFDK ISASGNTPVY VLHPKEDLHG LGFDPFKHAP EFKDRKRSHK SMNRDRNRSD VSVRGSLLIS NSGQYAPGFG
301: IGALEELGVE DEDIYASGFN YEQTEVDIEP SKTSGDSKFK LEDKKRGFFL SFKIASNSEY KLERFHPPEI PADFDGRHKF SSPIQTADKF SDLAPPEVAP
401: PEDTTLRLLI EGCAAMVARC GKHIEDFYKE KSKASPQFLF LDGGDGCSYY TRKLWEHQQK FIDRQRPDAV KSKPSSDKLT AENRGTILGE KPLDRSSKSS
501: SSFVSAKEAV QLQSNLGDTF VKPISLDGVP ESKKPFRNEP AKQARFEQFL KEKYQGGLRI ASLAPTITMS EADRARERLD FEAAADAIEK GKEYKAIDPL
601: SILGLPGLNE QRFVSSTQLE SSAVLQDERP MYPQREEFEW RPSPILCKRF DIVDPFMGKP MPLRRPISKM DTLMFMTEST KKINEDVRGS STIPQNAAVS
701: GTEEVEAQET ANNPDIVASS MQRPVDLYKA IFSDDSDDDM DEPLNNQQVD PVKTSEGANM ALNRLVAEDF LESLGKELGL EVPAEKPAQP PNVLFRSEIL
801: PTADASVSRN GQTSTFREIK ENECSLGLME AANGNGDGPS SNVEKLDLKY EHSADIGRSH SSHRQIRNGS PESDTSIERH RSRKRRSHHR NRSPTPDSGS
901: SDERRSGKKR KSHSRHRAGR SRTPDADLSS DSQKNKRKRR EKRSHRTRMS DSDSSDHEYK EKYTSSSRRS SDKDRSRKHS KHRRHRRKDS A
001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
Arabidopsis Description
TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.