Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra011920.1-P | |
| Bra030855.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G23080.1 | Bra011920.1-P | AT1G55520.1 | 16024589 |
| AT5G23080.1 | Bra030855.1-P | AT1G55520.1 | 16024589 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16838 | Canola | nucleus | 99.89 | 99.89 |
| Bra013015.1-P | Field mustard | nucleus | 72.42 | 85.79 |
| AT5G23080.1 | Thale cress | nucleus | 80.32 | 82.04 |
| VIT_17s0000g04440.t01 | Wine grape | nucleus | 56.21 | 53.56 |
| KRH03843 | Soybean | nucleus | 56.53 | 53.49 |
| KRH56717 | Soybean | nucleus | 55.58 | 52.07 |
| Solyc03g114410.2.1 | Tomato | nucleus | 52.84 | 51.02 |
| TraesCS7A01G231500.1 | Wheat | nucleus | 45.58 | 43.69 |
| TraesCS7B01G129900.1 | Wheat | nucleus | 45.26 | 43.39 |
| Os06t0489200-01 | Rice | nucleus | 44.84 | 43.29 |
| TraesCS7D01G231700.1 | Wheat | nucleus | 45.05 | 43.19 |
| Zm00001d045954_P004 | Maize | nucleus | 44.84 | 43.07 |
| KXG19969 | Sorghum | nucleus | 44.84 | 42.86 |
| GSMUA_Achr8P03600_001 | Banana | nucleus | 47.58 | 40.83 |
| HORVU7Hr1G047420.9 | Barley | mitochondrion | 35.58 | 33.04 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.10.2.1.4 | EnsemblPlantsGene:Bra035958 | EnsemblPlants:Bra035958.1 | EnsemblPlants:Bra035958.1-P | InterPro:DUF1604 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000061 | InterPro:IPR035967 |
| UniProt:M4F4F8 | PFAM:PF01805 | PFAM:PF07713 | PFscan:PS50128 | PANTHER:PTHR13384 | PANTHER:PTHR13384:SF19 |
| SMART:SM00648 | SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0002541FAB | SEG:seg |
Description
AT5G23080 (E=0.0) TGH | TGH (TOUGH); RNA binding / protein binding
Coordinates
chrA09:+:2722542..2731798
Molecular Weight (calculated)
107651.0 Da
IEP (calculated)
7.214
GRAVY (calculated)
-1.158
Length
950 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLEEDDFVF HGTPIEREEE IGSRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRKNRA GARRQNISDF
101: LDEDEKAELE GQSLSASSQF DTFGFTAAEH SRKQAEKEHH ERPSAIPGPV HDELIAPVSE SIGVKLLLKM GWRRGHSIKD VRAGSDARRE ARKAFLAFSA
201: DENTKESSDS LVLETEVKTS LDPQINEDTK FSETTPVYVL NPKQDLHGLG YDPFKHAPEF RENKRSRLSA GKEAGYRKPL SMKESLFGPN RKIGPGFGIG
301: ALEELDVEDE DVYAGYDFNQ TYVIEDEQPV RPHNDNTLRL TSKEHNVLPG FGAASNSDYS VERFDPPKIP KDFVARHKFL GPREAETKPT AVPPPDVPPP
401: EDKNLKLLID GFATFVSRCG KLYEDLSREK NESNQLFDFL RGGSGQDYYV RRLWEEQQKR GDQSNLQLDV KVPPSVEKMT AEKRGSLLGE RPLQKSLKET
501: ETSASSGGSF QFPTNLSDTF TKSASSQEAA DAVKPFKDDP AKQERFEQFL KEKYKGGLRT TDSNSFNRMS ESARAQERLD FEAAAEAIEK GKAYKEVRRA
601: TERPVDFLAV GLQFTSGGTE QIKDTGVVDM KSSKTYPKRE EFQWRPAPLL CKRFDLPDPF MGKPGTAPRA RNKMDSLIFL PDTVKAVSDL QEPKKETTVV
701: EPEVEVQVEN VERPVDLYKA IFSDDSEDDE EQQPMNGKRQ EGQEKKNEAA AATTLNRLIA GDFLESLGKE LGFEVPSDVT YPEGTKPMEE DNKSKRKSDA
801: ASERRPATKE KPEEKTSGLK LRSEEETDTK KREKSPRNWS GEEKSTKKRE ESPRNDLSSS DSSGDERRRK RSKKDRHRNN DTESDSSSDY HSRDKRSSRS
901: RRKRRESSRE KRSSHKKHHT KHYKTNDSSS RYSMDEDRKE SRLEKRRHRD
101: LDEDEKAELE GQSLSASSQF DTFGFTAAEH SRKQAEKEHH ERPSAIPGPV HDELIAPVSE SIGVKLLLKM GWRRGHSIKD VRAGSDARRE ARKAFLAFSA
201: DENTKESSDS LVLETEVKTS LDPQINEDTK FSETTPVYVL NPKQDLHGLG YDPFKHAPEF RENKRSRLSA GKEAGYRKPL SMKESLFGPN RKIGPGFGIG
301: ALEELDVEDE DVYAGYDFNQ TYVIEDEQPV RPHNDNTLRL TSKEHNVLPG FGAASNSDYS VERFDPPKIP KDFVARHKFL GPREAETKPT AVPPPDVPPP
401: EDKNLKLLID GFATFVSRCG KLYEDLSREK NESNQLFDFL RGGSGQDYYV RRLWEEQQKR GDQSNLQLDV KVPPSVEKMT AEKRGSLLGE RPLQKSLKET
501: ETSASSGGSF QFPTNLSDTF TKSASSQEAA DAVKPFKDDP AKQERFEQFL KEKYKGGLRT TDSNSFNRMS ESARAQERLD FEAAAEAIEK GKAYKEVRRA
601: TERPVDFLAV GLQFTSGGTE QIKDTGVVDM KSSKTYPKRE EFQWRPAPLL CKRFDLPDPF MGKPGTAPRA RNKMDSLIFL PDTVKAVSDL QEPKKETTVV
701: EPEVEVQVEN VERPVDLYKA IFSDDSEDDE EQQPMNGKRQ EGQEKKNEAA AATTLNRLIA GDFLESLGKE LGFEVPSDVT YPEGTKPMEE DNKSKRKSDA
801: ASERRPATKE KPEEKTSGLK LRSEEETDTK KREKSPRNWS GEEKSTKKRE ESPRNDLSSS DSSGDERRRK RSKKDRHRNN DTESDSSSDY HSRDKRSSRS
901: RRKRRESSRE KRSSHKKHHT KHYKTNDSSS RYSMDEDRKE SRLEKRRHRD
001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
Arabidopsis Description
TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.